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Index of group ./specifications/heccer/channel1-nernst1

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Channel and Nernst equation integration

1. Nernst function on a channel.

1. Nernst function on a channel.

Startup command : src/ns-sli ..//tests/scripts/heccer/channel1-nernst1.g

1.1. Can we set up a Nernst equation for a channel ?

1. Expected output 
Initiated
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.147021) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (0) (nil) (nil) (nil)							 4e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
Iteration 0
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-11)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.147021) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.21291e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.21291e-12) (nil) (nil) (nil)							 4e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
Iteration 100000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146991) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389188
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.21175e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.00914e-05)							 0.146991
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.21175e-12) (nil) (nil) (nil)							 4.00914e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0678263)
-------
Iteration 200000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (2.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.14696) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.038919
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.21061e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.01819e-05)							 0.14696
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.21061e-12) (nil) (nil) (nil)							 4.01819e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0676526)
-------
Iteration 300000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (3.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146931) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389193
00004 :: CONCEPTGATE 1 1 (nil)							 0.082602
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20947e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.02713e-05)							 0.146931
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20947e-12) (nil) (nil) (nil)							 4.02713e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0674789)
-------
Iteration 400000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (4.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146901) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389199
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826019
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20834e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.03598e-05)							 0.146901
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20834e-12) (nil) (nil) (nil)							 4.03598e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0673052)
-------
Iteration 500000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (5.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146872) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389206
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826017
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20722e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.04473e-05)							 0.146872
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20722e-12) (nil) (nil) (nil)							 4.04473e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0671315)
-------
Iteration 600000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (6.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146844) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389214
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826015
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.2061e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.05338e-05)							 0.146844
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.2061e-12) (nil) (nil) (nil)							 4.05338e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0669578)
-------
Iteration 700000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (7.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146816) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389225
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826013
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20499e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.06194e-05)							 0.146816
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20499e-12) (nil) (nil) (nil)							 4.06194e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0667841)
-------
Iteration 800000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (8.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146788) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389237
00004 :: CONCEPTGATE 1 1 (nil)							 0.082601
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20389e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.07041e-05)							 0.146788
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20389e-12) (nil) (nil) (nil)							 4.07041e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0666104)
-------
Iteration 900000
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (9.00001e-06)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.14676) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389251
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826007
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.20279e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.07878e-05)							 0.14676
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.20279e-12) (nil) (nil) (nil)							 4.07878e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0664367)
-------
Final Iteration
Heccer (pcName) : (/hardcoded_neutral)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-05)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.146733) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389266
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826004
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.2017e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.08706e-05)							 0.146733
00009 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.2017e-12) (nil) (nil) (nil)							 4.08706e-05
00010 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.066263)