Index of group ./specifications/integration/passive-only

active models in passive mode testing

1. Single active compartment in passive mode
Startup command : tests/perl/singlea-naf --passive-only

(No model has been loaded for the following set of commands.)
1.1. Is a single compartment with active channels solved correctly in passive mode ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (2e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0280634)
-------
Iteration 1
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (4e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0281267)
-------
Iteration 2
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (6e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0281899)
-------
Iteration 3
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (8e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028253)
-------
Iteration 4
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.0001)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0283161)
-------
Iteration 5
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00012)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0283791)
-------
Iteration 6
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00014)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028442)
-------
Iteration 7
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00016)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0285049)
-------
Iteration 8
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00018)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0285676)
-------
Iteration 9
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (4)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.0002)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.028)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0286303)