Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/xml

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importing and processing of a model encoded in xml

1. Import and export of a model in xml

1. Import and export of a model in xml

Startup command : ./neurospacesparse -q -v 1 channels/gaba.xml

1.1. Is neurospaces startup successful ?

1. Part of expected output 
./neurospacesparse: No errors for .+?/channels/gaba.xml.

1.2. Can we export the model to an NDF file ?

1. Executed command
export no ndf /tmp/1.ndf /**
2. Part of expected output 
neurospaces

1.3. Does the exported NDF file contain the correct model ?

1. Part of expected output 
application_output_file: /tmp/1.ndf
#!neurospacesparse
// -*- NEUROSPACES -*-

NEUROSPACES NDF

IMPORT
    FILE "mapper" "mappers/spikereceiver.ndf"
END IMPORT

PRIVATE_MODELS
  ALIAS "mapper::/Synapse" "Synapse"
  END ALIAS
END PRIVATE_MODELS

PUBLIC_MODELS
  CHANNEL "Purk_GABA"
    BINDABLES
      INPUT Vm,
      OUTPUT I,
    END BINDABLES
    PARAMETERS
      PARAMETER ( G_MAX = 1.077 ),
      PARAMETER ( Erev = -0.08 ),
    END PARAMETERS
    CHILD "Synapse" "synapse"
    END CHILD
    EQUATION_EXPONENTIAL "exp2"
      BINDABLES
        INPUT activation,
        OUTPUT G,
      END BINDABLES
      BINDINGS
        INPUT ../synapse->activation,
      END BINDINGS
      PARAMETERS
        PARAMETER ( TAU1 = 0.00093 ),
        PARAMETER ( TAU2 = 0.0265 ),
      END PARAMETERS
    END EQUATION_EXPONENTIAL
  END CHANNEL
END PUBLIC_MODELS

1.4. Can we export the model to an XML file ?

1. Executed command
export no xml /tmp/1.xml /**
2. Part of expected output 
neurospaces

1.5. Does the exported XML file contain the correct model ?

1. Part of expected output 
application_output_file: /tmp/1.xml
<neurospaces type="ndf"/>

<import>
    <file> <namespace>mapper</namespace> <filename>mappers/spikereceiver.ndf</filename> </file>
</import>

<private_models>
  <alias> <namespace>mapper::</namespace><prototype>/Synapse</prototype> <name>Synapse</name>
  </alias>
</private_models>

<public_models>
  <CHANNEL> <name>Purk_GABA</name>
    <bindables>
      <input> <name>Vm</name> </input>
      <output> <name>I</name> </output>
    </bindables>
    <parameters>
      <parameter> <name>G_MAX</name><value>1.077</value> </parameter>
      <parameter> <name>Erev</name><value>-0.08</value> </parameter>
    </parameters>
    <child> <prototype>Synapse</prototype> <name>synapse</name>
    </child>
    <EQUATION_EXPONENTIAL> <name>exp2</name>
      <bindables>
        <input> <name>activation</name> </input>
        <output> <name>G</name> </output>
      </bindables>
      <bindings>
        <input> <name>../synapse->activation</name> </input>
      </bindings>
      <parameters>
        <parameter> <name>TAU1</name><value>0.00093</value> </parameter>
        <parameter> <name>TAU2</name><value>0.0265</value> </parameter>
      </parameters>
    </EQUATION_EXPONENTIAL>
  </CHANNEL>
</public_models>
2. Comment
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