neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/segmenters

Index
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segment linearization, morphology branchpoints, indexing and structure analysis

1. Mixin of linearization of segments of cells, populations and networks

2. Examination of the purkinje cell morphology

3. Examination of the purkinje cell morphology without spines, after modifying the dendritic tree

4. Examination of the purkinje cell morphology

5. Examination of the purkinje cell morphology without spines, after modifying the dendritic tree

6. Examination of branchpoints of the purkinje cell without spines

7. Examination of branchpoints of the purkinje cell without spines

1. Mixin of linearization of segments of cells, populations and networks

Startup command : ./neurospacesparse -q -R legacy/networks/network-test.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

1.2. Can we linearize segments of a network ?

1. Executed command	segmenterlinearize /CerebellarCortex
2. Part of expected output	Number of segments: 33548 Number of segments without parents: 6266 Number of segment tips: 15104

1.3. Can we linearize segments of a heterogeneous population ?

1. Executed command

segmenterlinearize /CerebellarCortex/Purkinjes

2. Part of expected output

Number of segments: 27288
Number of segments without parents: 6
Number of segment tips: 8844

3. Comment

note that the number of tips is the number of spine heads (nothing more, nothing less)

1.4. Can we linearize segments of a homogeneous population ?

1. Executed command	segmenterlinearize /CerebellarCortex/Granules
2. Part of expected output	Number of segments: 6240 Number of segments without parents: 6240 Number of segment tips: 6240

1.5. Can we linearize segments of a big neuron ?

1. Executed command

segmenterlinearize /CerebellarCortex/Purkinjes/0

2. Part of expected output

Number of segments: 4548
Number of segments without parents: 1
Number of segment tips: 1474

3. Comment

note that the number of tips is the number of spine heads (nothing more, nothing less)

1.6. Can we linearize segments of a part of a big neuron ?

1. Executed command	segmenterlinearize /CerebellarCortex/Purkinjes/0/segments
2. Part of expected output	Number of segments: 4548 Number of segments without parents: 1 Number of segment tips: 1474
3. Comment	note that the number of tips is the number of spine heads (nothing more, nothing less)
4. This test is currently not executed	(disabled is 'See developer TODOs: instrumentation related')

1.7. Can we linearize segments of a one segment neuron ?

1. Executed command	segmenterlinearize /CerebellarCortex/Granules/0
2. Part of expected output	Number of segments: 1 Number of segments without parents: 1 Number of segment tips: 1

1.8. Can we linearize segments of a network (2) ?

1. Executed command	segmenterlinearize /CerebellarCortex
2. Part of expected output	Number of segments: 33548 Number of segments without parents: 6266 Number of segment tips: 15104

1.9. Can we linearize segments of a heterogeneous population (2) ?

1. Executed command

segmenterlinearize /CerebellarCortex/Purkinjes

2. Part of expected output

Number of segments: 27288
Number of segments without parents: 6
Number of segment tips: 8844

3. Comment

note that the number of tips is the number of spine heads (nothing more, nothing less)

1.10. Can we linearize segments of a homogeneous population (2) ?

1. Executed command	segmenterlinearize /CerebellarCortex/Granules
2. Part of expected output	Number of segments: 6240 Number of segments without parents: 6240 Number of segment tips: 6240

1.11. Can we linearize segments of a big neuron (2) ?

1. Executed command

segmenterlinearize /CerebellarCortex/Purkinjes/0

2. Part of expected output

Number of segments: 4548
Number of segments without parents: 1
Number of segment tips: 1474

3. Comment

note that the number of tips is the number of spine heads (nothing more, nothing less)

1.12. Can we linearize segments of a part of a big neuron (2) ?

1. Executed command	segmenterlinearize /CerebellarCortex/Purkinjes/0/segments
2. Part of expected output	Number of segments: 4548 Number of segments without parents: 1 Number of segment tips: 1474
3. Comment	note that the number of tips is the number of spine heads (nothing more, nothing less)
4. This test is currently not executed	(disabled is 'See developer TODOs: instrumentation related')

1.13. Can we linearize segments of a one segment neuron (2) ?

1. Executed command	segmenterlinearize /CerebellarCortex/Granules/0
2. Part of expected output	Number of segments: 1 Number of segments without parents: 1 Number of segment tips: 1

2. Examination of the purkinje cell morphology

Startup command : ./neurospacesparse -q -A -R legacy/cells/purk2m9s.ndf

2.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

2.2. Can we get information on all the dendritic tips of the purkinje cell ?

1. Executed command

segmentertips /Purkinje

2. Part of expected output

tips:
  name: Purkinje
  names:
    - /Purkinje/segments/b0s01[6]
    - /Purkinje/segments/b0s01[8]
    - /Purkinje/segments/b0s01[10]
    - /Purkinje/segments/b0s01[13]
    - /Purkinje/segments/b0s01[16]
    - /Purkinje/segments/b0s01[19]
    - /Purkinje/segments/b0s01[22]
    - /Purkinje/segments/b0s01[27]
    - /Purkinje/segments/b0s01[30]
    - /Purkinje/segments/b0s01[33]
    - /Purkinje/segments/b0s01[38]
    - /Purkinje/segments/b0s01[44]
    - /Purkinje/segments/b0s02[7]
    - /Purkinje/segments/b0s02[10]
    - /Purkinje/segments/b0s02[14]
    - /Purkinje/segments/b0s02[18]
    - /Purkinje/segments/b0s02[25]
    - /Purkinje/segments/b0s02[27]
    - /Purkinje/segments/b0s02[29]
    - /Purkinje/segments/b0s02[39]
    - /Purkinje/segments/b0s02[44]
    - /Purkinje/segments/b0s02[47]
    - /Purkinje/segments/b0s02[48]
    - /Purkinje/segments/b0s02[51]
    - /Purkinje/segments/b0s02[54]
    - /Purkinje/segments/b0s02[56]
    - /Purkinje/segments/b0s02[57]
    - /Purkinje/segments/b0s02[63]
    - /Purkinje/segments/b0s02[64]
    - /Purkinje/segments/b0s02[72]
    - /Purkinje/segments/b0s02[74]
    - /Purkinje/segments/b0s02[76]
    - /Purkinje/segments/b0s02[78]
    - /Purkinje/segments/b0s02[80]
    - /Purkinje/segments/b0s02[81]
    - /Purkinje/segments/b0s02[84]
    - /Purkinje/segments/b0s02[88]
    - /Purkinje/segments/b0s02[96]
    - /Purkinje/segments/b0s02[97]
    - /Purkinje/segments/b0s02[100]
    - /Purkinje/segments/b0s02[102]
    - /Purkinje/segments/b0s02[105]
    - /Purkinje/segments/b0s02[108]
    - /Purkinje/segments/b0s02[110]
    - /Purkinje/segments/b0s02[114]
    - /Purkinje/segments/b0s02[116]
    - /Purkinje/segments/b0s02[117]
    - /Purkinje/segments/b0s02[127]
    - /Purkinje/segments/b0s02[132]
    - /Purkinje/segments/b0s02[134]
    - /Purkinje/segments/b0s02[136]
    - /Purkinje/segments/b0s02[144]
    - /Purkinje/segments/b0s02[147]
    - /Purkinje/segments/b0s02[148]
    - /Purkinje/segments/b0s02[152]
    - /Purkinje/segments/b0s02[155]
    - /Purkinje/segments/b0s02[158]
    - /Purkinje/segments/b0s02[159]
    - /Purkinje/segments/b0s02[164]
    - /Purkinje/segments/b0s02[166]
    - /Purkinje/segments/b0s02[170]
    - /Purkinje/segments/b0s02[172]
    - /Purkinje/segments/b0s02[177]
    - /Purkinje/segments/b0s02[182]
    - /Purkinje/segments/b0s02[183]
    - /Purkinje/segments/b0s02[185]
    - /Purkinje/segments/b0s03[3]
    - /Purkinje/segments/b0s03[6]
    - /Purkinje/segments/b0s03[15]
    - /Purkinje/segments/b0s03[18]
    - /Purkinje/segments/b0s03[22]
    - /Purkinje/segments/b0s03[26]
    - /Purkinje/segments/b0s03[28]
    - /Purkinje/segments/b0s03[30]
    - /Purkinje/segments/b0s03[32]
    - /Purkinje/segments/b0s03[34]
    - /Purkinje/segments/b0s03[36]
    - /Purkinje/segments/b0s03[37]
    - /Purkinje/segments/b0s03[42]
    - /Purkinje/segments/b0s03[48]
    - /Purkinje/segments/b0s03[49]
    - /Purkinje/segments/b0s03[51]
    - /Purkinje/segments/b0s03[53]
    - /Purkinje/segments/b0s03[60]
    - /Purkinje/segments/b0s03[62]
    - /Purkinje/segments/b0s03[63]
    - /Purkinje/segments/b0s03[64]
    - /Purkinje/segments/b0s03[67]
    - /Purkinje/segments/b0s03[69]
    - /Purkinje/segments/b0s04[5]
    - /Purkinje/segments/b0s04[6]
    - /Purkinje/segments/b0s04[9]
    - /Purkinje/segments/b0s04[11]
    - /Purkinje/segments/b0s04[12]
    - /Purkinje/segments/b0s04[16]
    - /Purkinje/segments/b0s04[19]
    - /Purkinje/segments/b0s04[20]
    - /Purkinje/segments/b0s04[24]
    - /Purkinje/segments/b0s04[28]
    - /Purkinje/segments/b0s04[29]
    - /Purkinje/segments/b0s04[38]
    - /Purkinje/segments/b0s04[40]
    - /Purkinje/segments/b0s04[42]
    - /Purkinje/segments/b0s04[50]
    - /Purkinje/segments/b0s04[52]
    - /Purkinje/segments/b0s04[54]
    - /Purkinje/segments/b0s04[55]
    - /Purkinje/segments/b0s04[56]
    - /Purkinje/segments/b0s04[57]
    - /Purkinje/segments/b0s04[60]
    - /Purkinje/segments/b0s04[62]
    - /Purkinje/segments/b0s04[64]
    - /Purkinje/segments/b0s04[68]
    - /Purkinje/segments/b0s04[70]
    - /Purkinje/segments/b0s04[73]
    - /Purkinje/segments/b0s04[76]
    - /Purkinje/segments/b0s04[77]
    - /Purkinje/segments/b0s04[81]
    - /Purkinje/segments/b0s04[82]
    - /Purkinje/segments/b0s04[88]
    - /Purkinje/segments/b0s04[98]
    - /Purkinje/segments/b0s04[99]
    - /Purkinje/segments/b0s04[102]
    - /Purkinje/segments/b0s04[107]
    - /Purkinje/segments/b0s04[108]
    - /Purkinje/segments/b0s04[112]
    - /Purkinje/segments/b0s04[115]
    - /Purkinje/segments/b0s04[118]
    - /Purkinje/segments/b0s04[119]
    - /Purkinje/segments/b0s04[123]
    - /Purkinje/segments/b0s04[124]
    - /Purkinje/segments/b0s04[134]
    - /Purkinje/segments/b0s04[136]
    - /Purkinje/segments/b0s04[139]
    - /Purkinje/segments/b0s04[142]
    - /Purkinje/segments/b0s04[144]
    - /Purkinje/segments/b0s04[148]
    - /Purkinje/segments/b0s04[154]
    - /Purkinje/segments/b0s04[155]
    - /Purkinje/segments/b1s05[3]
    - /Purkinje/segments/b1s05[5]
    - /Purkinje/segments/b1s05[6]
    - /Purkinje/segments/b1s06[8]
    - /Purkinje/segments/b1s06[14]
    - /Purkinje/segments/b1s06[16]
    - /Purkinje/segments/b1s06[24]
    - /Purkinje/segments/b1s06[25]
    - /Purkinje/segments/b1s06[30]
    - /Purkinje/segments/b1s06[33]
    - /Purkinje/segments/b1s06[35]
    - /Purkinje/segments/b1s06[37]
    - /Purkinje/segments/b1s06[38]
    - /Purkinje/segments/b1s06[41]
    - /Purkinje/segments/b1s06[43]
    - /Purkinje/segments/b1s06[47]
    - /Purkinje/segments/b1s06[48]
    - /Purkinje/segments/b1s06[52]
    - /Purkinje/segments/b1s06[54]
    - /Purkinje/segments/b1s06[63]
    - /Purkinje/segments/b1s06[70]
    - /Purkinje/segments/b1s06[71]
    - /Purkinje/segments/b1s06[74]
    - /Purkinje/segments/b1s06[79]
    - /Purkinje/segments/b1s06[81]
    - /Purkinje/segments/b1s06[82]
    - /Purkinje/segments/b1s06[85]
    - /Purkinje/segments/b1s06[91]
    - /Purkinje/segments/b1s06[95]
    - /Purkinje/segments/b1s06[98]
    - /Purkinje/segments/b1s06[101]
    - /Purkinje/segments/b1s06[104]
    - /Purkinje/segments/b1s06[105]
    - /Purkinje/segments/b1s06[106]
    - /Purkinje/segments/b1s06[112]
    - /Purkinje/segments/b1s06[115]
    - /Purkinje/segments/b1s06[117]
    - /Purkinje/segments/b1s06[120]
    - /Purkinje/segments/b1s06[121]
    - /Purkinje/segments/b1s06[128]
    - /Purkinje/segments/b1s06[133]
    - /Purkinje/segments/b1s06[134]
    - /Purkinje/segments/b1s06[136]
    - /Purkinje/segments/b1s06[141]
    - /Purkinje/segments/b1s06[144]
    - /Purkinje/segments/b1s06[145]
    - /Purkinje/segments/b1s06[153]
    - /Purkinje/segments/b1s06[159]
    - /Purkinje/segments/b1s06[162]
    - /Purkinje/segments/b1s06[164]
    - /Purkinje/segments/b1s06[167]
    - /Purkinje/segments/b1s06[174]
    - /Purkinje/segments/b1s06[175]
    - /Purkinje/segments/b1s06[178]
    - /Purkinje/segments/b1s06[180]
    - /Purkinje/segments/b1s06[182]
    - /Purkinje/segments/b1s07[5]
    - /Purkinje/segments/b1s08[4]
    - /Purkinje/segments/b1s08[11]
    - /Purkinje/segments/b1s08[12]
    - /Purkinje/segments/b1s08[14]
    - /Purkinje/segments/b1s08[15]
    - /Purkinje/segments/b1s08[19]
    - /Purkinje/segments/b1s08[20]
    - /Purkinje/segments/b1s08[21]
    - /Purkinje/segments/b1s08[24]
    - /Purkinje/segments/b1s09[4]
    - /Purkinje/segments/b1s09[6]
    - /Purkinje/segments/b1s09[8]
    - /Purkinje/segments/b1s09[9]
    - /Purkinje/segments/b1s09[18]
    - /Purkinje/segments/b1s09[23]
    - /Purkinje/segments/b1s09[24]
    - /Purkinje/segments/b1s09[27]
    - /Purkinje/segments/b1s09[28]
    - /Purkinje/segments/b1s09[30]
    - /Purkinje/segments/b1s09[33]
    - /Purkinje/segments/b1s09[36]
    - /Purkinje/segments/b1s09[39]
    - /Purkinje/segments/b1s10[6]
    - /Purkinje/segments/b1s10[9]
    - /Purkinje/segments/b1s10[13]
    - /Purkinje/segments/b1s10[15]
    - /Purkinje/segments/b1s10[17]
    - /Purkinje/segments/b1s10[19]
    - /Purkinje/segments/b1s10[20]
    - /Purkinje/segments/b1s10[22]
    - /Purkinje/segments/b1s10[27]
    - /Purkinje/segments/b1s10[28]
    - /Purkinje/segments/b1s10[36]
    - /Purkinje/segments/b1s10[42]
    - /Purkinje/segments/b1s10[43]
    - /Purkinje/segments/b1s10[45]
    - /Purkinje/segments/b1s10[48]
    - /Purkinje/segments/b1s10[53]
    - /Purkinje/segments/b1s10[56]
    - /Purkinje/segments/b1s10[60]
    - /Purkinje/segments/b1s10[62]
    - /Purkinje/segments/b1s10[64]
    - /Purkinje/segments/b1s10[66]
    - /Purkinje/segments/b1s10[70]
    - /Purkinje/segments/b1s10[71]
    - /Purkinje/segments/b1s10[77]
    - /Purkinje/segments/b1s10[81]
    - /Purkinje/segments/b1s10[82]
    - /Purkinje/segments/b1s10[84]
    - /Purkinje/segments/b1s10[85]
    - /Purkinje/segments/b1s11[3]
    - /Purkinje/segments/b1s11[7]
    - /Purkinje/segments/b1s11[10]
    - /Purkinje/segments/b1s12[3]
    - /Purkinje/segments/b1s12[11]
    - /Purkinje/segments/b1s12[12]
    - /Purkinje/segments/b1s12[16]
    - /Purkinje/segments/b1s12[27]
    - /Purkinje/segments/b1s12[29]
    - /Purkinje/segments/b1s12[31]
    - /Purkinje/segments/b1s12[33]
    - /Purkinje/segments/b1s12[36]
    - /Purkinje/segments/b1s12[38]
    - /Purkinje/segments/b1s12[42]
    - /Purkinje/segments/b1s12[45]
    - /Purkinje/segments/b1s12[49]
    - /Purkinje/segments/b1s12[52]
    - /Purkinje/segments/b1s12[53]
    - /Purkinje/segments/b1s13[3]
    - /Purkinje/segments/b1s13[8]
    - /Purkinje/segments/b1s14[12]
    - /Purkinje/segments/b1s14[15]
    - /Purkinje/segments/b1s14[16]
    - /Purkinje/segments/b1s14[23]
    - /Purkinje/segments/b1s14[31]
    - /Purkinje/segments/b1s14[33]
    - /Purkinje/segments/b1s14[35]
    - /Purkinje/segments/b1s14[39]
    - /Purkinje/segments/b1s14[42]
    - /Purkinje/segments/b1s15[1]
    - /Purkinje/segments/b1s15[4]
    - /Purkinje/segments/b1s15[6]
    - /Purkinje/segments/b1s15[7]
    - /Purkinje/segments/b1s16[2]
    - /Purkinje/segments/b1s17[1]
    - /Purkinje/segments/b1s18[0]
    - /Purkinje/segments/b1s19[2]
    - /Purkinje/segments/b1s19[12]
    - /Purkinje/segments/b1s19[14]
    - /Purkinje/segments/b1s19[16]
    - /Purkinje/segments/b1s19[20]
    - /Purkinje/segments/b1s19[22]
    - /Purkinje/segments/b1s19[24]
    - /Purkinje/segments/b1s19[29]
    - /Purkinje/segments/b1s19[37]
    - /Purkinje/segments/b1s19[39]
    - /Purkinje/segments/b1s19[42]
    - /Purkinje/segments/b1s20[6]
    - /Purkinje/segments/b1s20[9]
    - /Purkinje/segments/b1s20[10]
    - /Purkinje/segments/b1s20[12]
    - /Purkinje/segments/b1s20[14]
    - /Purkinje/segments/b1s20[18]
    - /Purkinje/segments/b1s20[20]
    - /Purkinje/segments/b1s20[21]
    - /Purkinje/segments/b2s21[4]
    - /Purkinje/segments/b2s21[5]
    - /Purkinje/segments/b2s21[9]
    - /Purkinje/segments/b2s21[15]
    - /Purkinje/segments/b2s21[17]
    - /Purkinje/segments/b2s21[20]
    - /Purkinje/segments/b2s21[22]
    - /Purkinje/segments/b2s21[24]
    - /Purkinje/segments/b2s22[4]
    - /Purkinje/segments/b2s22[7]
    - /Purkinje/segments/b2s22[8]
    - /Purkinje/segments/b2s22[11]
    - /Purkinje/segments/b2s22[12]
    - /Purkinje/segments/b2s23[4]
    - /Purkinje/segments/b2s23[8]
    - /Purkinje/segments/b2s23[13]
    - /Purkinje/segments/b2s23[15]
    - /Purkinje/segments/b2s23[16]
    - /Purkinje/segments/b2s23[20]
    - /Purkinje/segments/b2s23[25]
    - /Purkinje/segments/b2s23[27]
    - /Purkinje/segments/b2s24[4]
    - /Purkinje/segments/b2s24[6]
    - /Purkinje/segments/b2s25[4]
    - /Purkinje/segments/b2s25[8]
    - /Purkinje/segments/b2s25[10]
    - /Purkinje/segments/b2s25[14]
    - /Purkinje/segments/b2s25[16]
    - /Purkinje/segments/b2s25[18]
    - /Purkinje/segments/b2s25[22]
    - /Purkinje/segments/b2s25[25]
    - /Purkinje/segments/b2s25[27]
    - /Purkinje/segments/b2s25[28]
    - /Purkinje/segments/b2s25[31]
    - /Purkinje/segments/b2s25[33]
    - /Purkinje/segments/b2s25[34]
    - /Purkinje/segments/b2s26[3]
    - /Purkinje/segments/b2s26[6]
    - /Purkinje/segments/b2s26[10]
    - /Purkinje/segments/b2s26[11]
    - /Purkinje/segments/b2s26[15]
    - /Purkinje/segments/b2s26[19]
    - /Purkinje/segments/b2s26[20]
    - /Purkinje/segments/b2s26[23]
    - /Purkinje/segments/b2s26[24]
    - /Purkinje/segments/b2s26[27]
    - /Purkinje/segments/b2s26[29]
    - /Purkinje/segments/b2s26[30]
    - /Purkinje/segments/b2s26[33]
    - /Purkinje/segments/b2s26[34]
    - /Purkinje/segments/b2s26[35]
    - /Purkinje/segments/b2s27[4]
    - /Purkinje/segments/b2s27[6]
    - /Purkinje/segments/b2s27[7]
    - /Purkinje/segments/b2s27[10]
    - /Purkinje/segments/b2s27[14]
    - /Purkinje/segments/b2s27[16]
    - /Purkinje/segments/b2s27[22]
    - /Purkinje/segments/b2s27[24]
    - /Purkinje/segments/b2s27[26]
    - /Purkinje/segments/b2s27[33]
    - /Purkinje/segments/b2s27[34]
    - /Purkinje/segments/b2s27[39]
    - /Purkinje/segments/b2s27[41]
    - /Purkinje/segments/b2s27[45]
    - /Purkinje/segments/b2s27[47]
    - /Purkinje/segments/b2s28[4]
    - /Purkinje/segments/b2s28[7]
    - /Purkinje/segments/b2s28[14]
    - /Purkinje/segments/b2s28[15]
    - /Purkinje/segments/b2s28[17]
    - /Purkinje/segments/b2s28[20]
    - /Purkinje/segments/b2s29[5]
    - /Purkinje/segments/b2s29[9]
    - /Purkinje/segments/b2s29[13]
    - /Purkinje/segments/b2s29[17]
    - /Purkinje/segments/b2s29[18]
    - /Purkinje/segments/b2s29[20]
    - /Purkinje/segments/b2s29[24]
    - /Purkinje/segments/b2s29[28]
    - /Purkinje/segments/b2s29[29]
    - /Purkinje/segments/b2s29[33]
    - /Purkinje/segments/b2s29[34]
    - /Purkinje/segments/b2s29[38]
    - /Purkinje/segments/b2s29[41]
    - /Purkinje/segments/b2s30[6]
    - /Purkinje/segments/b2s30[7]
    - /Purkinje/segments/b2s30[9]
    - /Purkinje/segments/b2s30[13]
    - /Purkinje/segments/b2s30[15]
    - /Purkinje/segments/b2s30[18]
    - /Purkinje/segments/b2s30[21]
    - /Purkinje/segments/b2s30[22]
    - /Purkinje/segments/b2s30[23]
    - /Purkinje/segments/b2s31[2]
    - /Purkinje/segments/b2s31[3]
    - /Purkinje/segments/b2s32[1]
    - /Purkinje/segments/b2s33[3]
    - /Purkinje/segments/b2s33[6]
    - /Purkinje/segments/b2s34[5]
    - /Purkinje/segments/b2s34[8]
    - /Purkinje/segments/b2s34[9]
    - /Purkinje/segments/b3s35[3]
    - /Purkinje/segments/b3s35[10]
    - /Purkinje/segments/b3s35[13]
    - /Purkinje/segments/b3s35[17]
    - /Purkinje/segments/b3s35[20]
    - /Purkinje/segments/b3s36[4]
    - /Purkinje/segments/b3s36[8]
    - /Purkinje/segments/b3s36[9]
    - /Purkinje/segments/b3s37[5]
    - /Purkinje/segments/b3s37[10]
    - /Purkinje/segments/b3s37[11]
    - /Purkinje/segments/b3s37[13]
    - /Purkinje/segments/b3s37[14]
    - /Purkinje/segments/b3s37[16]
    - /Purkinje/segments/b3s37[17]
    - /Purkinje/segments/b3s37[23]
    - /Purkinje/segments/b3s37[25]
    - /Purkinje/segments/b3s37[28]
    - /Purkinje/segments/b3s37[32]
    - /Purkinje/segments/b3s37[33]
    - /Purkinje/segments/b3s37[35]
    - /Purkinje/segments/b3s37[39]
    - /Purkinje/segments/b3s37[41]
    - /Purkinje/segments/b3s38[4]
    - /Purkinje/segments/b3s39[5]
    - /Purkinje/segments/b3s39[10]
    - /Purkinje/segments/b3s39[13]
    - /Purkinje/segments/b3s40[3]
    - /Purkinje/segments/b3s40[6]
    - /Purkinje/segments/b3s40[7]
    - /Purkinje/segments/b3s41[3]
    - /Purkinje/segments/b3s41[7]
    - /Purkinje/segments/b3s41[8]
    - /Purkinje/segments/b3s41[9]
    - /Purkinje/segments/b3s42[3]
    - /Purkinje/segments/b3s43[3]
    - /Purkinje/segments/b3s43[4]
    - /Purkinje/segments/b3s43[5]
    - /Purkinje/segments/b3s44[4]
    - /Purkinje/segments/b3s44[8]
    - /Purkinje/segments/b3s44[9]
    - /Purkinje/segments/b3s44[13]
    - /Purkinje/segments/b3s44[15]
    - /Purkinje/segments/b3s44[20]
    - /Purkinje/segments/b3s44[23]
    - /Purkinje/segments/b3s44[25]
    - /Purkinje/segments/b3s44[29]
    - /Purkinje/segments/b3s44[35]
    - /Purkinje/segments/b3s44[36]
    - /Purkinje/segments/b3s44[37]
    - /Purkinje/segments/b3s44[42]
    - /Purkinje/segments/b3s44[48]
    - /Purkinje/segments/b3s44[49]
    - /Purkinje/segments/b3s45[3]
    - /Purkinje/segments/b3s45[9]
    - /Purkinje/segments/b3s45[11]
    - /Purkinje/segments/b3s45[18]
    - /Purkinje/segments/b3s45[19]
    - /Purkinje/segments/b3s45[23]
    - /Purkinje/segments/b3s45[28]
    - /Purkinje/segments/b3s45[31]
    - /Purkinje/segments/b3s45[32]
    - /Purkinje/segments/b3s45[35]
    - /Purkinje/segments/b3s45[39]
    - /Purkinje/segments/b3s45[40]
    - /Purkinje/segments/b3s45[41]
    - /Purkinje/segments/b3s46[4]
    - /Purkinje/segments/b3s46[6]
    - /Purkinje/segments/b3s46[12]
    - /Purkinje/segments/b3s46[15]

3. Examination of the purkinje cell morphology without spines, after modifying the dendritic tree

Startup command : ./neurospacesparse -q -R -A legacy/cells/purk2m9s.ndf

3.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

3.2. Can we delete the soma ?

1. Executed command	delete /Purkinje/segments/soma
2. Part of expected output	neurospaces

3.3. Can we get information on all the dendritic tips of the purkinje cell, soma deleted ?

1. Executed command

segmentertips /Purkinje

2. Part of expected output

warning: cannot find parent segment /Purkinje/segments/soma for segment /Purkinje/segments/main[0]
---
tips:
  name: Purkinje
  names:
    - /Purkinje/segments/b0s01[6]
    - /Purkinje/segments/b0s01[8]
    - /Purkinje/segments/b0s01[10]
    - /Purkinje/segments/b0s01[13]
    - /Purkinje/segments/b0s01[16]
    - /Purkinje/segments/b0s01[19]
    - /Purkinje/segments/b0s01[22]
    - /Purkinje/segments/b0s01[27]
    - /Purkinje/segments/b0s01[30]
    - /Purkinje/segments/b0s01[33]
    - /Purkinje/segments/b0s01[38]
    - /Purkinje/segments/b0s01[44]
    - /Purkinje/segments/b0s02[7]
    - /Purkinje/segments/b0s02[10]
    - /Purkinje/segments/b0s02[14]
    - /Purkinje/segments/b0s02[18]
    - /Purkinje/segments/b0s02[25]
    - /Purkinje/segments/b0s02[27]
    - /Purkinje/segments/b0s02[29]
    - /Purkinje/segments/b0s02[39]
    - /Purkinje/segments/b0s02[44]
    - /Purkinje/segments/b0s02[47]
    - /Purkinje/segments/b0s02[48]
    - /Purkinje/segments/b0s02[51]
    - /Purkinje/segments/b0s02[54]
    - /Purkinje/segments/b0s02[56]
    - /Purkinje/segments/b0s02[57]
    - /Purkinje/segments/b0s02[63]
    - /Purkinje/segments/b0s02[64]
    - /Purkinje/segments/b0s02[72]
    - /Purkinje/segments/b0s02[74]
    - /Purkinje/segments/b0s02[76]
    - /Purkinje/segments/b0s02[78]
    - /Purkinje/segments/b0s02[80]
    - /Purkinje/segments/b0s02[81]
    - /Purkinje/segments/b0s02[84]
    - /Purkinje/segments/b0s02[88]
    - /Purkinje/segments/b0s02[96]
    - /Purkinje/segments/b0s02[97]
    - /Purkinje/segments/b0s02[100]
    - /Purkinje/segments/b0s02[102]
    - /Purkinje/segments/b0s02[105]
    - /Purkinje/segments/b0s02[108]
    - /Purkinje/segments/b0s02[110]
    - /Purkinje/segments/b0s02[114]
    - /Purkinje/segments/b0s02[116]
    - /Purkinje/segments/b0s02[117]
    - /Purkinje/segments/b0s02[127]
    - /Purkinje/segments/b0s02[132]
    - /Purkinje/segments/b0s02[134]
    - /Purkinje/segments/b0s02[136]
    - /Purkinje/segments/b0s02[144]
    - /Purkinje/segments/b0s02[147]
    - /Purkinje/segments/b0s02[148]
    - /Purkinje/segments/b0s02[152]
    - /Purkinje/segments/b0s02[155]
    - /Purkinje/segments/b0s02[158]
    - /Purkinje/segments/b0s02[159]
    - /Purkinje/segments/b0s02[164]
    - /Purkinje/segments/b0s02[166]
    - /Purkinje/segments/b0s02[170]
    - /Purkinje/segments/b0s02[172]
    - /Purkinje/segments/b0s02[177]
    - /Purkinje/segments/b0s02[182]
    - /Purkinje/segments/b0s02[183]
    - /Purkinje/segments/b0s02[185]
    - /Purkinje/segments/b0s03[3]
    - /Purkinje/segments/b0s03[6]
    - /Purkinje/segments/b0s03[15]
    - /Purkinje/segments/b0s03[18]
    - /Purkinje/segments/b0s03[22]
    - /Purkinje/segments/b0s03[26]
    - /Purkinje/segments/b0s03[28]
    - /Purkinje/segments/b0s03[30]
    - /Purkinje/segments/b0s03[32]
    - /Purkinje/segments/b0s03[34]
    - /Purkinje/segments/b0s03[36]
    - /Purkinje/segments/b0s03[37]
    - /Purkinje/segments/b0s03[42]
    - /Purkinje/segments/b0s03[48]
    - /Purkinje/segments/b0s03[49]
    - /Purkinje/segments/b0s03[51]
    - /Purkinje/segments/b0s03[53]
    - /Purkinje/segments/b0s03[60]
    - /Purkinje/segments/b0s03[62]
    - /Purkinje/segments/b0s03[63]
    - /Purkinje/segments/b0s03[64]
    - /Purkinje/segments/b0s03[67]
    - /Purkinje/segments/b0s03[69]
    - /Purkinje/segments/b0s04[5]
    - /Purkinje/segments/b0s04[6]
    - /Purkinje/segments/b0s04[9]
    - /Purkinje/segments/b0s04[11]
    - /Purkinje/segments/b0s04[12]
    - /Purkinje/segments/b0s04[16]
    - /Purkinje/segments/b0s04[19]
    - /Purkinje/segments/b0s04[20]
    - /Purkinje/segments/b0s04[24]
    - /Purkinje/segments/b0s04[28]
    - /Purkinje/segments/b0s04[29]
    - /Purkinje/segments/b0s04[38]
    - /Purkinje/segments/b0s04[40]
    - /Purkinje/segments/b0s04[42]
    - /Purkinje/segments/b0s04[50]
    - /Purkinje/segments/b0s04[52]
    - /Purkinje/segments/b0s04[54]
    - /Purkinje/segments/b0s04[55]
    - /Purkinje/segments/b0s04[56]
    - /Purkinje/segments/b0s04[57]
    - /Purkinje/segments/b0s04[60]
    - /Purkinje/segments/b0s04[62]
    - /Purkinje/segments/b0s04[64]
    - /Purkinje/segments/b0s04[68]
    - /Purkinje/segments/b0s04[70]
    - /Purkinje/segments/b0s04[73]
    - /Purkinje/segments/b0s04[76]
    - /Purkinje/segments/b0s04[77]
    - /Purkinje/segments/b0s04[81]
    - /Purkinje/segments/b0s04[82]
    - /Purkinje/segments/b0s04[88]
    - /Purkinje/segments/b0s04[98]
    - /Purkinje/segments/b0s04[99]
    - /Purkinje/segments/b0s04[102]
    - /Purkinje/segments/b0s04[107]
    - /Purkinje/segments/b0s04[108]
    - /Purkinje/segments/b0s04[112]
    - /Purkinje/segments/b0s04[115]
    - /Purkinje/segments/b0s04[118]
    - /Purkinje/segments/b0s04[119]
    - /Purkinje/segments/b0s04[123]
    - /Purkinje/segments/b0s04[124]
    - /Purkinje/segments/b0s04[134]
    - /Purkinje/segments/b0s04[136]
    - /Purkinje/segments/b0s04[139]
    - /Purkinje/segments/b0s04[142]
    - /Purkinje/segments/b0s04[144]
    - /Purkinje/segments/b0s04[148]
    - /Purkinje/segments/b0s04[154]
    - /Purkinje/segments/b0s04[155]
    - /Purkinje/segments/b1s05[3]
    - /Purkinje/segments/b1s05[5]
    - /Purkinje/segments/b1s05[6]
    - /Purkinje/segments/b1s06[8]
    - /Purkinje/segments/b1s06[14]
    - /Purkinje/segments/b1s06[16]
    - /Purkinje/segments/b1s06[24]
    - /Purkinje/segments/b1s06[25]
    - /Purkinje/segments/b1s06[30]
    - /Purkinje/segments/b1s06[33]
    - /Purkinje/segments/b1s06[35]
    - /Purkinje/segments/b1s06[37]
    - /Purkinje/segments/b1s06[38]
    - /Purkinje/segments/b1s06[41]
    - /Purkinje/segments/b1s06[43]
    - /Purkinje/segments/b1s06[47]
    - /Purkinje/segments/b1s06[48]
    - /Purkinje/segments/b1s06[52]
    - /Purkinje/segments/b1s06[54]
    - /Purkinje/segments/b1s06[63]
    - /Purkinje/segments/b1s06[70]
    - /Purkinje/segments/b1s06[71]
    - /Purkinje/segments/b1s06[74]
    - /Purkinje/segments/b1s06[79]
    - /Purkinje/segments/b1s06[81]
    - /Purkinje/segments/b1s06[82]
    - /Purkinje/segments/b1s06[85]
    - /Purkinje/segments/b1s06[91]
    - /Purkinje/segments/b1s06[95]
    - /Purkinje/segments/b1s06[98]
    - /Purkinje/segments/b1s06[101]
    - /Purkinje/segments/b1s06[104]
    - /Purkinje/segments/b1s06[105]
    - /Purkinje/segments/b1s06[106]
    - /Purkinje/segments/b1s06[112]
    - /Purkinje/segments/b1s06[115]
    - /Purkinje/segments/b1s06[117]
    - /Purkinje/segments/b1s06[120]
    - /Purkinje/segments/b1s06[121]
    - /Purkinje/segments/b1s06[128]
    - /Purkinje/segments/b1s06[133]
    - /Purkinje/segments/b1s06[134]
    - /Purkinje/segments/b1s06[136]
    - /Purkinje/segments/b1s06[141]
    - /Purkinje/segments/b1s06[144]
    - /Purkinje/segments/b1s06[145]
    - /Purkinje/segments/b1s06[153]
    - /Purkinje/segments/b1s06[159]
    - /Purkinje/segments/b1s06[162]
    - /Purkinje/segments/b1s06[164]
    - /Purkinje/segments/b1s06[167]
    - /Purkinje/segments/b1s06[174]
    - /Purkinje/segments/b1s06[175]
    - /Purkinje/segments/b1s06[178]
    - /Purkinje/segments/b1s06[180]
    - /Purkinje/segments/b1s06[182]
    - /Purkinje/segments/b1s07[5]
    - /Purkinje/segments/b1s08[4]
    - /Purkinje/segments/b1s08[11]
    - /Purkinje/segments/b1s08[12]
    - /Purkinje/segments/b1s08[14]
    - /Purkinje/segments/b1s08[15]
    - /Purkinje/segments/b1s08[19]
    - /Purkinje/segments/b1s08[20]
    - /Purkinje/segments/b1s08[21]
    - /Purkinje/segments/b1s08[24]
    - /Purkinje/segments/b1s09[4]
    - /Purkinje/segments/b1s09[6]
    - /Purkinje/segments/b1s09[8]
    - /Purkinje/segments/b1s09[9]
    - /Purkinje/segments/b1s09[18]
    - /Purkinje/segments/b1s09[23]
    - /Purkinje/segments/b1s09[24]
    - /Purkinje/segments/b1s09[27]
    - /Purkinje/segments/b1s09[28]
    - /Purkinje/segments/b1s09[30]
    - /Purkinje/segments/b1s09[33]
    - /Purkinje/segments/b1s09[36]
    - /Purkinje/segments/b1s09[39]
    - /Purkinje/segments/b1s10[6]
    - /Purkinje/segments/b1s10[9]
    - /Purkinje/segments/b1s10[13]
    - /Purkinje/segments/b1s10[15]
    - /Purkinje/segments/b1s10[17]
    - /Purkinje/segments/b1s10[19]
    - /Purkinje/segments/b1s10[20]
    - /Purkinje/segments/b1s10[22]
    - /Purkinje/segments/b1s10[27]
    - /Purkinje/segments/b1s10[28]
    - /Purkinje/segments/b1s10[36]
    - /Purkinje/segments/b1s10[42]
    - /Purkinje/segments/b1s10[43]
    - /Purkinje/segments/b1s10[45]
    - /Purkinje/segments/b1s10[48]
    - /Purkinje/segments/b1s10[53]
    - /Purkinje/segments/b1s10[56]
    - /Purkinje/segments/b1s10[60]
    - /Purkinje/segments/b1s10[62]
    - /Purkinje/segments/b1s10[64]
    - /Purkinje/segments/b1s10[66]
    - /Purkinje/segments/b1s10[70]
    - /Purkinje/segments/b1s10[71]
    - /Purkinje/segments/b1s10[77]
    - /Purkinje/segments/b1s10[81]
    - /Purkinje/segments/b1s10[82]
    - /Purkinje/segments/b1s10[84]
    - /Purkinje/segments/b1s10[85]
    - /Purkinje/segments/b1s11[3]
    - /Purkinje/segments/b1s11[7]
    - /Purkinje/segments/b1s11[10]
    - /Purkinje/segments/b1s12[3]
    - /Purkinje/segments/b1s12[11]
    - /Purkinje/segments/b1s12[12]
    - /Purkinje/segments/b1s12[16]
    - /Purkinje/segments/b1s12[27]
    - /Purkinje/segments/b1s12[29]
    - /Purkinje/segments/b1s12[31]
    - /Purkinje/segments/b1s12[33]
    - /Purkinje/segments/b1s12[36]
    - /Purkinje/segments/b1s12[38]
    - /Purkinje/segments/b1s12[42]
    - /Purkinje/segments/b1s12[45]
    - /Purkinje/segments/b1s12[49]
    - /Purkinje/segments/b1s12[52]
    - /Purkinje/segments/b1s12[53]
    - /Purkinje/segments/b1s13[3]
    - /Purkinje/segments/b1s13[8]
    - /Purkinje/segments/b1s14[12]
    - /Purkinje/segments/b1s14[15]
    - /Purkinje/segments/b1s14[16]
    - /Purkinje/segments/b1s14[23]
    - /Purkinje/segments/b1s14[31]
    - /Purkinje/segments/b1s14[33]
    - /Purkinje/segments/b1s14[35]
    - /Purkinje/segments/b1s14[39]
    - /Purkinje/segments/b1s14[42]
    - /Purkinje/segments/b1s15[1]
    - /Purkinje/segments/b1s15[4]
    - /Purkinje/segments/b1s15[6]
    - /Purkinje/segments/b1s15[7]
    - /Purkinje/segments/b1s16[2]
    - /Purkinje/segments/b1s17[1]
    - /Purkinje/segments/b1s18[0]
    - /Purkinje/segments/b1s19[2]
    - /Purkinje/segments/b1s19[12]
    - /Purkinje/segments/b1s19[14]
    - /Purkinje/segments/b1s19[16]
    - /Purkinje/segments/b1s19[20]
    - /Purkinje/segments/b1s19[22]
    - /Purkinje/segments/b1s19[24]
    - /Purkinje/segments/b1s19[29]
    - /Purkinje/segments/b1s19[37]
    - /Purkinje/segments/b1s19[39]
    - /Purkinje/segments/b1s19[42]
    - /Purkinje/segments/b1s20[6]
    - /Purkinje/segments/b1s20[9]
    - /Purkinje/segments/b1s20[10]
    - /Purkinje/segments/b1s20[12]
    - /Purkinje/segments/b1s20[14]
    - /Purkinje/segments/b1s20[18]
    - /Purkinje/segments/b1s20[20]
    - /Purkinje/segments/b1s20[21]
    - /Purkinje/segments/b2s21[4]
    - /Purkinje/segments/b2s21[5]
    - /Purkinje/segments/b2s21[9]
    - /Purkinje/segments/b2s21[15]
    - /Purkinje/segments/b2s21[17]
    - /Purkinje/segments/b2s21[20]
    - /Purkinje/segments/b2s21[22]
    - /Purkinje/segments/b2s21[24]
    - /Purkinje/segments/b2s22[4]
    - /Purkinje/segments/b2s22[7]
    - /Purkinje/segments/b2s22[8]
    - /Purkinje/segments/b2s22[11]
    - /Purkinje/segments/b2s22[12]
    - /Purkinje/segments/b2s23[4]
    - /Purkinje/segments/b2s23[8]
    - /Purkinje/segments/b2s23[13]
    - /Purkinje/segments/b2s23[15]
    - /Purkinje/segments/b2s23[16]
    - /Purkinje/segments/b2s23[20]
    - /Purkinje/segments/b2s23[25]
    - /Purkinje/segments/b2s23[27]
    - /Purkinje/segments/b2s24[4]
    - /Purkinje/segments/b2s24[6]
    - /Purkinje/segments/b2s25[4]
    - /Purkinje/segments/b2s25[8]
    - /Purkinje/segments/b2s25[10]
    - /Purkinje/segments/b2s25[14]
    - /Purkinje/segments/b2s25[16]
    - /Purkinje/segments/b2s25[18]
    - /Purkinje/segments/b2s25[22]
    - /Purkinje/segments/b2s25[25]
    - /Purkinje/segments/b2s25[27]
    - /Purkinje/segments/b2s25[28]
    - /Purkinje/segments/b2s25[31]
    - /Purkinje/segments/b2s25[33]
    - /Purkinje/segments/b2s25[34]
    - /Purkinje/segments/b2s26[3]
    - /Purkinje/segments/b2s26[6]
    - /Purkinje/segments/b2s26[10]
    - /Purkinje/segments/b2s26[11]
    - /Purkinje/segments/b2s26[15]
    - /Purkinje/segments/b2s26[19]
    - /Purkinje/segments/b2s26[20]
    - /Purkinje/segments/b2s26[23]
    - /Purkinje/segments/b2s26[24]
    - /Purkinje/segments/b2s26[27]
    - /Purkinje/segments/b2s26[29]
    - /Purkinje/segments/b2s26[30]
    - /Purkinje/segments/b2s26[33]
    - /Purkinje/segments/b2s26[34]
    - /Purkinje/segments/b2s26[35]
    - /Purkinje/segments/b2s27[4]
    - /Purkinje/segments/b2s27[6]
    - /Purkinje/segments/b2s27[7]
    - /Purkinje/segments/b2s27[10]
    - /Purkinje/segments/b2s27[14]
    - /Purkinje/segments/b2s27[16]
    - /Purkinje/segments/b2s27[22]
    - /Purkinje/segments/b2s27[24]
    - /Purkinje/segments/b2s27[26]
    - /Purkinje/segments/b2s27[33]
    - /Purkinje/segments/b2s27[34]
    - /Purkinje/segments/b2s27[39]
    - /Purkinje/segments/b2s27[41]
    - /Purkinje/segments/b2s27[45]
    - /Purkinje/segments/b2s27[47]
    - /Purkinje/segments/b2s28[4]
    - /Purkinje/segments/b2s28[7]
    - /Purkinje/segments/b2s28[14]
    - /Purkinje/segments/b2s28[15]
    - /Purkinje/segments/b2s28[17]
    - /Purkinje/segments/b2s28[20]
    - /Purkinje/segments/b2s29[5]
    - /Purkinje/segments/b2s29[9]
    - /Purkinje/segments/b2s29[13]
    - /Purkinje/segments/b2s29[17]
    - /Purkinje/segments/b2s29[18]
    - /Purkinje/segments/b2s29[20]
    - /Purkinje/segments/b2s29[24]
    - /Purkinje/segments/b2s29[28]
    - /Purkinje/segments/b2s29[29]
    - /Purkinje/segments/b2s29[33]
    - /Purkinje/segments/b2s29[34]
    - /Purkinje/segments/b2s29[38]
    - /Purkinje/segments/b2s29[41]
    - /Purkinje/segments/b2s30[6]
    - /Purkinje/segments/b2s30[7]
    - /Purkinje/segments/b2s30[9]
    - /Purkinje/segments/b2s30[13]
    - /Purkinje/segments/b2s30[15]
    - /Purkinje/segments/b2s30[18]
    - /Purkinje/segments/b2s30[21]
    - /Purkinje/segments/b2s30[22]
    - /Purkinje/segments/b2s30[23]
    - /Purkinje/segments/b2s31[2]
    - /Purkinje/segments/b2s31[3]
    - /Purkinje/segments/b2s32[1]
    - /Purkinje/segments/b2s33[3]
    - /Purkinje/segments/b2s33[6]
    - /Purkinje/segments/b2s34[5]
    - /Purkinje/segments/b2s34[8]
    - /Purkinje/segments/b2s34[9]
    - /Purkinje/segments/b3s35[3]
    - /Purkinje/segments/b3s35[10]
    - /Purkinje/segments/b3s35[13]
    - /Purkinje/segments/b3s35[17]
    - /Purkinje/segments/b3s35[20]
    - /Purkinje/segments/b3s36[4]
    - /Purkinje/segments/b3s36[8]
    - /Purkinje/segments/b3s36[9]
    - /Purkinje/segments/b3s37[5]
    - /Purkinje/segments/b3s37[10]
    - /Purkinje/segments/b3s37[11]
    - /Purkinje/segments/b3s37[13]
    - /Purkinje/segments/b3s37[14]
    - /Purkinje/segments/b3s37[16]
    - /Purkinje/segments/b3s37[17]
    - /Purkinje/segments/b3s37[23]
    - /Purkinje/segments/b3s37[25]
    - /Purkinje/segments/b3s37[28]
    - /Purkinje/segments/b3s37[32]
    - /Purkinje/segments/b3s37[33]
    - /Purkinje/segments/b3s37[35]
    - /Purkinje/segments/b3s37[39]
    - /Purkinje/segments/b3s37[41]
    - /Purkinje/segments/b3s38[4]
    - /Purkinje/segments/b3s39[5]
    - /Purkinje/segments/b3s39[10]
    - /Purkinje/segments/b3s39[13]
    - /Purkinje/segments/b3s40[3]
    - /Purkinje/segments/b3s40[6]
    - /Purkinje/segments/b3s40[7]
    - /Purkinje/segments/b3s41[3]
    - /Purkinje/segments/b3s41[7]
    - /Purkinje/segments/b3s41[8]
    - /Purkinje/segments/b3s41[9]
    - /Purkinje/segments/b3s42[3]
    - /Purkinje/segments/b3s43[3]
    - /Purkinje/segments/b3s43[4]
    - /Purkinje/segments/b3s43[5]
    - /Purkinje/segments/b3s44[4]
    - /Purkinje/segments/b3s44[8]
    - /Purkinje/segments/b3s44[9]
    - /Purkinje/segments/b3s44[13]
    - /Purkinje/segments/b3s44[15]
    - /Purkinje/segments/b3s44[20]
    - /Purkinje/segments/b3s44[23]
    - /Purkinje/segments/b3s44[25]
    - /Purkinje/segments/b3s44[29]
    - /Purkinje/segments/b3s44[35]
    - /Purkinje/segments/b3s44[36]
    - /Purkinje/segments/b3s44[37]
    - /Purkinje/segments/b3s44[42]
    - /Purkinje/segments/b3s44[48]
    - /Purkinje/segments/b3s44[49]
    - /Purkinje/segments/b3s45[3]
    - /Purkinje/segments/b3s45[9]
    - /Purkinje/segments/b3s45[11]
    - /Purkinje/segments/b3s45[18]
    - /Purkinje/segments/b3s45[19]
    - /Purkinje/segments/b3s45[23]
    - /Purkinje/segments/b3s45[28]
    - /Purkinje/segments/b3s45[31]
    - /Purkinje/segments/b3s45[32]
    - /Purkinje/segments/b3s45[35]
    - /Purkinje/segments/b3s45[39]
    - /Purkinje/segments/b3s45[40]
    - /Purkinje/segments/b3s45[41]
    - /Purkinje/segments/b3s46[4]
    - /Purkinje/segments/b3s46[6]
    - /Purkinje/segments/b3s46[12]
    - /Purkinje/segments/b3s46[15]

4. Examination of the purkinje cell morphology

Startup command : ./neurospacesparse -q -A -R cells/purkinje/edsjb1994.ndf

4.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

4.2. Can we get information on all the dendritic tips of the purkinje cell ?

1. Executed command

segmentertips /Purkinje

2. Part of expected output

tips:
  name: Purkinje
  names:
    - /Purkinje/segments/b0s01[6]
    - /Purkinje/segments/b0s01[8]
    - /Purkinje/segments/b0s01[10]
    - /Purkinje/segments/b0s01[13]
    - /Purkinje/segments/b0s01[16]
    - /Purkinje/segments/b0s01[19]
    - /Purkinje/segments/b0s01[22]
    - /Purkinje/segments/b0s01[27]
    - /Purkinje/segments/b0s01[30]
    - /Purkinje/segments/b0s01[33]
    - /Purkinje/segments/b0s01[38]
    - /Purkinje/segments/b0s01[44]
    - /Purkinje/segments/b0s02[7]
    - /Purkinje/segments/b0s02[10]
    - /Purkinje/segments/b0s02[14]
    - /Purkinje/segments/b0s02[18]
    - /Purkinje/segments/b0s02[25]
    - /Purkinje/segments/b0s02[27]
    - /Purkinje/segments/b0s02[29]
    - /Purkinje/segments/b0s02[39]
    - /Purkinje/segments/b0s02[44]
    - /Purkinje/segments/b0s02[47]
    - /Purkinje/segments/b0s02[48]
    - /Purkinje/segments/b0s02[51]
    - /Purkinje/segments/b0s02[54]
    - /Purkinje/segments/b0s02[56]
    - /Purkinje/segments/b0s02[57]
    - /Purkinje/segments/b0s02[63]
    - /Purkinje/segments/b0s02[64]
    - /Purkinje/segments/b0s02[72]
    - /Purkinje/segments/b0s02[74]
    - /Purkinje/segments/b0s02[76]
    - /Purkinje/segments/b0s02[78]
    - /Purkinje/segments/b0s02[80]
    - /Purkinje/segments/b0s02[81]
    - /Purkinje/segments/b0s02[84]
    - /Purkinje/segments/b0s02[88]
    - /Purkinje/segments/b0s02[96]
    - /Purkinje/segments/b0s02[97]
    - /Purkinje/segments/b0s02[100]
    - /Purkinje/segments/b0s02[102]
    - /Purkinje/segments/b0s02[105]
    - /Purkinje/segments/b0s02[108]
    - /Purkinje/segments/b0s02[110]
    - /Purkinje/segments/b0s02[114]
    - /Purkinje/segments/b0s02[116]
    - /Purkinje/segments/b0s02[117]
    - /Purkinje/segments/b0s02[127]
    - /Purkinje/segments/b0s02[132]
    - /Purkinje/segments/b0s02[134]
    - /Purkinje/segments/b0s02[136]
    - /Purkinje/segments/b0s02[144]
    - /Purkinje/segments/b0s02[147]
    - /Purkinje/segments/b0s02[148]
    - /Purkinje/segments/b0s02[152]
    - /Purkinje/segments/b0s02[155]
    - /Purkinje/segments/b0s02[158]
    - /Purkinje/segments/b0s02[159]
    - /Purkinje/segments/b0s02[164]
    - /Purkinje/segments/b0s02[166]
    - /Purkinje/segments/b0s02[170]
    - /Purkinje/segments/b0s02[172]
    - /Purkinje/segments/b0s02[177]
    - /Purkinje/segments/b0s02[182]
    - /Purkinje/segments/b0s02[183]
    - /Purkinje/segments/b0s02[185]
    - /Purkinje/segments/b0s03[3]
    - /Purkinje/segments/b0s03[6]
    - /Purkinje/segments/b0s03[15]
    - /Purkinje/segments/b0s03[18]
    - /Purkinje/segments/b0s03[22]
    - /Purkinje/segments/b0s03[26]
    - /Purkinje/segments/b0s03[28]
    - /Purkinje/segments/b0s03[30]
    - /Purkinje/segments/b0s03[32]
    - /Purkinje/segments/b0s03[34]
    - /Purkinje/segments/b0s03[36]
    - /Purkinje/segments/b0s03[37]
    - /Purkinje/segments/b0s03[42]
    - /Purkinje/segments/b0s03[48]
    - /Purkinje/segments/b0s03[49]
    - /Purkinje/segments/b0s03[51]
    - /Purkinje/segments/b0s03[53]
    - /Purkinje/segments/b0s03[60]
    - /Purkinje/segments/b0s03[62]
    - /Purkinje/segments/b0s03[63]
    - /Purkinje/segments/b0s03[64]
    - /Purkinje/segments/b0s03[67]
    - /Purkinje/segments/b0s03[69]
    - /Purkinje/segments/b0s04[5]
    - /Purkinje/segments/b0s04[6]
    - /Purkinje/segments/b0s04[9]
    - /Purkinje/segments/b0s04[11]
    - /Purkinje/segments/b0s04[12]
    - /Purkinje/segments/b0s04[16]
    - /Purkinje/segments/b0s04[19]
    - /Purkinje/segments/b0s04[20]
    - /Purkinje/segments/b0s04[24]
    - /Purkinje/segments/b0s04[28]
    - /Purkinje/segments/b0s04[29]
    - /Purkinje/segments/b0s04[38]
    - /Purkinje/segments/b0s04[40]
    - /Purkinje/segments/b0s04[42]
    - /Purkinje/segments/b0s04[50]
    - /Purkinje/segments/b0s04[52]
    - /Purkinje/segments/b0s04[54]
    - /Purkinje/segments/b0s04[55]
    - /Purkinje/segments/b0s04[56]
    - /Purkinje/segments/b0s04[57]
    - /Purkinje/segments/b0s04[60]
    - /Purkinje/segments/b0s04[62]
    - /Purkinje/segments/b0s04[64]
    - /Purkinje/segments/b0s04[68]
    - /Purkinje/segments/b0s04[70]
    - /Purkinje/segments/b0s04[73]
    - /Purkinje/segments/b0s04[76]
    - /Purkinje/segments/b0s04[77]
    - /Purkinje/segments/b0s04[81]
    - /Purkinje/segments/b0s04[82]
    - /Purkinje/segments/b0s04[88]
    - /Purkinje/segments/b0s04[98]
    - /Purkinje/segments/b0s04[99]
    - /Purkinje/segments/b0s04[102]
    - /Purkinje/segments/b0s04[107]
    - /Purkinje/segments/b0s04[108]
    - /Purkinje/segments/b0s04[112]
    - /Purkinje/segments/b0s04[115]
    - /Purkinje/segments/b0s04[118]
    - /Purkinje/segments/b0s04[119]
    - /Purkinje/segments/b0s04[123]
    - /Purkinje/segments/b0s04[124]
    - /Purkinje/segments/b0s04[134]
    - /Purkinje/segments/b0s04[136]
    - /Purkinje/segments/b0s04[139]
    - /Purkinje/segments/b0s04[142]
    - /Purkinje/segments/b0s04[144]
    - /Purkinje/segments/b0s04[148]
    - /Purkinje/segments/b0s04[154]
    - /Purkinje/segments/b0s04[155]
    - /Purkinje/segments/b1s05[3]
    - /Purkinje/segments/b1s05[5]
    - /Purkinje/segments/b1s05[6]
    - /Purkinje/segments/b1s06[8]
    - /Purkinje/segments/b1s06[14]
    - /Purkinje/segments/b1s06[16]
    - /Purkinje/segments/b1s06[24]
    - /Purkinje/segments/b1s06[25]
    - /Purkinje/segments/b1s06[30]
    - /Purkinje/segments/b1s06[33]
    - /Purkinje/segments/b1s06[35]
    - /Purkinje/segments/b1s06[37]
    - /Purkinje/segments/b1s06[38]
    - /Purkinje/segments/b1s06[41]
    - /Purkinje/segments/b1s06[43]
    - /Purkinje/segments/b1s06[47]
    - /Purkinje/segments/b1s06[48]
    - /Purkinje/segments/b1s06[52]
    - /Purkinje/segments/b1s06[54]
    - /Purkinje/segments/b1s06[63]
    - /Purkinje/segments/b1s06[70]
    - /Purkinje/segments/b1s06[71]
    - /Purkinje/segments/b1s06[74]
    - /Purkinje/segments/b1s06[79]
    - /Purkinje/segments/b1s06[81]
    - /Purkinje/segments/b1s06[82]
    - /Purkinje/segments/b1s06[85]
    - /Purkinje/segments/b1s06[91]
    - /Purkinje/segments/b1s06[95]
    - /Purkinje/segments/b1s06[98]
    - /Purkinje/segments/b1s06[101]
    - /Purkinje/segments/b1s06[104]
    - /Purkinje/segments/b1s06[105]
    - /Purkinje/segments/b1s06[106]
    - /Purkinje/segments/b1s06[112]
    - /Purkinje/segments/b1s06[115]
    - /Purkinje/segments/b1s06[117]
    - /Purkinje/segments/b1s06[120]
    - /Purkinje/segments/b1s06[121]
    - /Purkinje/segments/b1s06[128]
    - /Purkinje/segments/b1s06[133]
    - /Purkinje/segments/b1s06[134]
    - /Purkinje/segments/b1s06[136]
    - /Purkinje/segments/b1s06[141]
    - /Purkinje/segments/b1s06[144]
    - /Purkinje/segments/b1s06[145]
    - /Purkinje/segments/b1s06[153]
    - /Purkinje/segments/b1s06[159]
    - /Purkinje/segments/b1s06[162]
    - /Purkinje/segments/b1s06[164]
    - /Purkinje/segments/b1s06[167]
    - /Purkinje/segments/b1s06[174]
    - /Purkinje/segments/b1s06[175]
    - /Purkinje/segments/b1s06[178]
    - /Purkinje/segments/b1s06[180]
    - /Purkinje/segments/b1s06[182]
    - /Purkinje/segments/b1s07[5]
    - /Purkinje/segments/b1s08[4]
    - /Purkinje/segments/b1s08[11]
    - /Purkinje/segments/b1s08[12]
    - /Purkinje/segments/b1s08[14]
    - /Purkinje/segments/b1s08[15]
    - /Purkinje/segments/b1s08[19]
    - /Purkinje/segments/b1s08[20]
    - /Purkinje/segments/b1s08[21]
    - /Purkinje/segments/b1s08[24]
    - /Purkinje/segments/b1s09[4]
    - /Purkinje/segments/b1s09[6]
    - /Purkinje/segments/b1s09[8]
    - /Purkinje/segments/b1s09[9]
    - /Purkinje/segments/b1s09[18]
    - /Purkinje/segments/b1s09[23]
    - /Purkinje/segments/b1s09[24]
    - /Purkinje/segments/b1s09[27]
    - /Purkinje/segments/b1s09[28]
    - /Purkinje/segments/b1s09[30]
    - /Purkinje/segments/b1s09[33]
    - /Purkinje/segments/b1s09[36]
    - /Purkinje/segments/b1s09[39]
    - /Purkinje/segments/b1s10[6]
    - /Purkinje/segments/b1s10[9]
    - /Purkinje/segments/b1s10[13]
    - /Purkinje/segments/b1s10[15]
    - /Purkinje/segments/b1s10[17]
    - /Purkinje/segments/b1s10[19]
    - /Purkinje/segments/b1s10[20]
    - /Purkinje/segments/b1s10[22]
    - /Purkinje/segments/b1s10[27]
    - /Purkinje/segments/b1s10[28]
    - /Purkinje/segments/b1s10[36]
    - /Purkinje/segments/b1s10[42]
    - /Purkinje/segments/b1s10[43]
    - /Purkinje/segments/b1s10[45]
    - /Purkinje/segments/b1s10[48]
    - /Purkinje/segments/b1s10[53]
    - /Purkinje/segments/b1s10[56]
    - /Purkinje/segments/b1s10[60]
    - /Purkinje/segments/b1s10[62]
    - /Purkinje/segments/b1s10[64]
    - /Purkinje/segments/b1s10[66]
    - /Purkinje/segments/b1s10[70]
    - /Purkinje/segments/b1s10[71]
    - /Purkinje/segments/b1s10[77]
    - /Purkinje/segments/b1s10[81]
    - /Purkinje/segments/b1s10[82]
    - /Purkinje/segments/b1s10[84]
    - /Purkinje/segments/b1s10[85]
    - /Purkinje/segments/b1s11[3]
    - /Purkinje/segments/b1s11[7]
    - /Purkinje/segments/b1s11[10]
    - /Purkinje/segments/b1s12[3]
    - /Purkinje/segments/b1s12[11]
    - /Purkinje/segments/b1s12[12]
    - /Purkinje/segments/b1s12[16]
    - /Purkinje/segments/b1s12[27]
    - /Purkinje/segments/b1s12[29]
    - /Purkinje/segments/b1s12[31]
    - /Purkinje/segments/b1s12[33]
    - /Purkinje/segments/b1s12[36]
    - /Purkinje/segments/b1s12[38]
    - /Purkinje/segments/b1s12[42]
    - /Purkinje/segments/b1s12[45]
    - /Purkinje/segments/b1s12[49]
    - /Purkinje/segments/b1s12[52]
    - /Purkinje/segments/b1s12[53]
    - /Purkinje/segments/b1s13[3]
    - /Purkinje/segments/b1s13[8]
    - /Purkinje/segments/b1s14[12]
    - /Purkinje/segments/b1s14[15]
    - /Purkinje/segments/b1s14[16]
    - /Purkinje/segments/b1s14[23]
    - /Purkinje/segments/b1s14[31]
    - /Purkinje/segments/b1s14[33]
    - /Purkinje/segments/b1s14[35]
    - /Purkinje/segments/b1s14[39]
    - /Purkinje/segments/b1s14[42]
    - /Purkinje/segments/b1s15[1]
    - /Purkinje/segments/b1s15[4]
    - /Purkinje/segments/b1s15[6]
    - /Purkinje/segments/b1s15[7]
    - /Purkinje/segments/b1s16[2]
    - /Purkinje/segments/b1s17[1]
    - /Purkinje/segments/b1s18[0]
    - /Purkinje/segments/b1s19[2]
    - /Purkinje/segments/b1s19[12]
    - /Purkinje/segments/b1s19[14]
    - /Purkinje/segments/b1s19[16]
    - /Purkinje/segments/b1s19[20]
    - /Purkinje/segments/b1s19[22]
    - /Purkinje/segments/b1s19[24]
    - /Purkinje/segments/b1s19[29]
    - /Purkinje/segments/b1s19[37]
    - /Purkinje/segments/b1s19[39]
    - /Purkinje/segments/b1s19[42]
    - /Purkinje/segments/b1s20[6]
    - /Purkinje/segments/b1s20[9]
    - /Purkinje/segments/b1s20[10]
    - /Purkinje/segments/b1s20[12]
    - /Purkinje/segments/b1s20[14]
    - /Purkinje/segments/b1s20[18]
    - /Purkinje/segments/b1s20[20]
    - /Purkinje/segments/b1s20[21]
    - /Purkinje/segments/b2s21[4]
    - /Purkinje/segments/b2s21[5]
    - /Purkinje/segments/b2s21[9]
    - /Purkinje/segments/b2s21[15]
    - /Purkinje/segments/b2s21[17]
    - /Purkinje/segments/b2s21[20]
    - /Purkinje/segments/b2s21[22]
    - /Purkinje/segments/b2s21[24]
    - /Purkinje/segments/b2s22[4]
    - /Purkinje/segments/b2s22[7]
    - /Purkinje/segments/b2s22[8]
    - /Purkinje/segments/b2s22[11]
    - /Purkinje/segments/b2s22[12]
    - /Purkinje/segments/b2s23[4]
    - /Purkinje/segments/b2s23[8]
    - /Purkinje/segments/b2s23[13]
    - /Purkinje/segments/b2s23[15]
    - /Purkinje/segments/b2s23[16]
    - /Purkinje/segments/b2s23[20]
    - /Purkinje/segments/b2s23[25]
    - /Purkinje/segments/b2s23[27]
    - /Purkinje/segments/b2s24[4]
    - /Purkinje/segments/b2s24[6]
    - /Purkinje/segments/b2s25[4]
    - /Purkinje/segments/b2s25[8]
    - /Purkinje/segments/b2s25[10]
    - /Purkinje/segments/b2s25[14]
    - /Purkinje/segments/b2s25[16]
    - /Purkinje/segments/b2s25[18]
    - /Purkinje/segments/b2s25[22]
    - /Purkinje/segments/b2s25[25]
    - /Purkinje/segments/b2s25[27]
    - /Purkinje/segments/b2s25[28]
    - /Purkinje/segments/b2s25[31]
    - /Purkinje/segments/b2s25[33]
    - /Purkinje/segments/b2s25[34]
    - /Purkinje/segments/b2s26[3]
    - /Purkinje/segments/b2s26[6]
    - /Purkinje/segments/b2s26[10]
    - /Purkinje/segments/b2s26[11]
    - /Purkinje/segments/b2s26[15]
    - /Purkinje/segments/b2s26[19]
    - /Purkinje/segments/b2s26[20]
    - /Purkinje/segments/b2s26[23]
    - /Purkinje/segments/b2s26[24]
    - /Purkinje/segments/b2s26[27]
    - /Purkinje/segments/b2s26[29]
    - /Purkinje/segments/b2s26[30]
    - /Purkinje/segments/b2s26[33]
    - /Purkinje/segments/b2s26[34]
    - /Purkinje/segments/b2s26[35]
    - /Purkinje/segments/b2s27[4]
    - /Purkinje/segments/b2s27[6]
    - /Purkinje/segments/b2s27[7]
    - /Purkinje/segments/b2s27[10]
    - /Purkinje/segments/b2s27[14]
    - /Purkinje/segments/b2s27[16]
    - /Purkinje/segments/b2s27[22]
    - /Purkinje/segments/b2s27[24]
    - /Purkinje/segments/b2s27[26]
    - /Purkinje/segments/b2s27[33]
    - /Purkinje/segments/b2s27[34]
    - /Purkinje/segments/b2s27[39]
    - /Purkinje/segments/b2s27[41]
    - /Purkinje/segments/b2s27[45]
    - /Purkinje/segments/b2s27[47]
    - /Purkinje/segments/b2s28[4]
    - /Purkinje/segments/b2s28[7]
    - /Purkinje/segments/b2s28[14]
    - /Purkinje/segments/b2s28[15]
    - /Purkinje/segments/b2s28[17]
    - /Purkinje/segments/b2s28[20]
    - /Purkinje/segments/b2s29[5]
    - /Purkinje/segments/b2s29[9]
    - /Purkinje/segments/b2s29[13]
    - /Purkinje/segments/b2s29[17]
    - /Purkinje/segments/b2s29[18]
    - /Purkinje/segments/b2s29[20]
    - /Purkinje/segments/b2s29[24]
    - /Purkinje/segments/b2s29[28]
    - /Purkinje/segments/b2s29[29]
    - /Purkinje/segments/b2s29[33]
    - /Purkinje/segments/b2s29[34]
    - /Purkinje/segments/b2s29[38]
    - /Purkinje/segments/b2s29[41]
    - /Purkinje/segments/b2s30[6]
    - /Purkinje/segments/b2s30[7]
    - /Purkinje/segments/b2s30[9]
    - /Purkinje/segments/b2s30[13]
    - /Purkinje/segments/b2s30[15]
    - /Purkinje/segments/b2s30[18]
    - /Purkinje/segments/b2s30[21]
    - /Purkinje/segments/b2s30[22]
    - /Purkinje/segments/b2s30[23]
    - /Purkinje/segments/b2s31[2]
    - /Purkinje/segments/b2s31[3]
    - /Purkinje/segments/b2s32[1]
    - /Purkinje/segments/b2s33[3]
    - /Purkinje/segments/b2s33[6]
    - /Purkinje/segments/b2s34[5]
    - /Purkinje/segments/b2s34[8]
    - /Purkinje/segments/b2s34[9]
    - /Purkinje/segments/b3s35[3]
    - /Purkinje/segments/b3s35[10]
    - /Purkinje/segments/b3s35[13]
    - /Purkinje/segments/b3s35[17]
    - /Purkinje/segments/b3s35[20]
    - /Purkinje/segments/b3s36[4]
    - /Purkinje/segments/b3s36[8]
    - /Purkinje/segments/b3s36[9]
    - /Purkinje/segments/b3s37[5]
    - /Purkinje/segments/b3s37[10]
    - /Purkinje/segments/b3s37[11]
    - /Purkinje/segments/b3s37[13]
    - /Purkinje/segments/b3s37[14]
    - /Purkinje/segments/b3s37[16]
    - /Purkinje/segments/b3s37[17]
    - /Purkinje/segments/b3s37[23]
    - /Purkinje/segments/b3s37[25]
    - /Purkinje/segments/b3s37[28]
    - /Purkinje/segments/b3s37[32]
    - /Purkinje/segments/b3s37[33]
    - /Purkinje/segments/b3s37[35]
    - /Purkinje/segments/b3s37[39]
    - /Purkinje/segments/b3s37[41]
    - /Purkinje/segments/b3s38[4]
    - /Purkinje/segments/b3s39[5]
    - /Purkinje/segments/b3s39[10]
    - /Purkinje/segments/b3s39[13]
    - /Purkinje/segments/b3s40[3]
    - /Purkinje/segments/b3s40[6]
    - /Purkinje/segments/b3s40[7]
    - /Purkinje/segments/b3s41[3]
    - /Purkinje/segments/b3s41[7]
    - /Purkinje/segments/b3s41[8]
    - /Purkinje/segments/b3s41[9]
    - /Purkinje/segments/b3s42[3]
    - /Purkinje/segments/b3s43[3]
    - /Purkinje/segments/b3s43[4]
    - /Purkinje/segments/b3s43[5]
    - /Purkinje/segments/b3s44[4]
    - /Purkinje/segments/b3s44[8]
    - /Purkinje/segments/b3s44[9]
    - /Purkinje/segments/b3s44[13]
    - /Purkinje/segments/b3s44[15]
    - /Purkinje/segments/b3s44[20]
    - /Purkinje/segments/b3s44[23]
    - /Purkinje/segments/b3s44[25]
    - /Purkinje/segments/b3s44[29]
    - /Purkinje/segments/b3s44[35]
    - /Purkinje/segments/b3s44[36]
    - /Purkinje/segments/b3s44[37]
    - /Purkinje/segments/b3s44[42]
    - /Purkinje/segments/b3s44[48]
    - /Purkinje/segments/b3s44[49]
    - /Purkinje/segments/b3s45[3]
    - /Purkinje/segments/b3s45[9]
    - /Purkinje/segments/b3s45[11]
    - /Purkinje/segments/b3s45[18]
    - /Purkinje/segments/b3s45[19]
    - /Purkinje/segments/b3s45[23]
    - /Purkinje/segments/b3s45[28]
    - /Purkinje/segments/b3s45[31]
    - /Purkinje/segments/b3s45[32]
    - /Purkinje/segments/b3s45[35]
    - /Purkinje/segments/b3s45[39]
    - /Purkinje/segments/b3s45[40]
    - /Purkinje/segments/b3s45[41]
    - /Purkinje/segments/b3s46[4]
    - /Purkinje/segments/b3s46[6]
    - /Purkinje/segments/b3s46[12]
    - /Purkinje/segments/b3s46[15]

5. Examination of the purkinje cell morphology without spines, after modifying the dendritic tree

Startup command : ./neurospacesparse -q -R -A cells/purkinje/edsjb1994.ndf

5.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

5.2. Can we delete the soma ?

1. Executed command	delete /Purkinje/segments/soma
2. Part of expected output	neurospaces

5.3. Can we get information on all the dendritic tips of the purkinje cell, soma deleted ?

1. Executed command

segmentertips /Purkinje

2. Part of expected output

warning: cannot find parent segment /Purkinje/segments/soma for segment /Purkinje/segments/main[0]
---
tips:
  name: Purkinje
  names:
    - /Purkinje/segments/b0s01[6]
    - /Purkinje/segments/b0s01[8]
    - /Purkinje/segments/b0s01[10]
    - /Purkinje/segments/b0s01[13]
    - /Purkinje/segments/b0s01[16]
    - /Purkinje/segments/b0s01[19]
    - /Purkinje/segments/b0s01[22]
    - /Purkinje/segments/b0s01[27]
    - /Purkinje/segments/b0s01[30]
    - /Purkinje/segments/b0s01[33]
    - /Purkinje/segments/b0s01[38]
    - /Purkinje/segments/b0s01[44]
    - /Purkinje/segments/b0s02[7]
    - /Purkinje/segments/b0s02[10]
    - /Purkinje/segments/b0s02[14]
    - /Purkinje/segments/b0s02[18]
    - /Purkinje/segments/b0s02[25]
    - /Purkinje/segments/b0s02[27]
    - /Purkinje/segments/b0s02[29]
    - /Purkinje/segments/b0s02[39]
    - /Purkinje/segments/b0s02[44]
    - /Purkinje/segments/b0s02[47]
    - /Purkinje/segments/b0s02[48]
    - /Purkinje/segments/b0s02[51]
    - /Purkinje/segments/b0s02[54]
    - /Purkinje/segments/b0s02[56]
    - /Purkinje/segments/b0s02[57]
    - /Purkinje/segments/b0s02[63]
    - /Purkinje/segments/b0s02[64]
    - /Purkinje/segments/b0s02[72]
    - /Purkinje/segments/b0s02[74]
    - /Purkinje/segments/b0s02[76]
    - /Purkinje/segments/b0s02[78]
    - /Purkinje/segments/b0s02[80]
    - /Purkinje/segments/b0s02[81]
    - /Purkinje/segments/b0s02[84]
    - /Purkinje/segments/b0s02[88]
    - /Purkinje/segments/b0s02[96]
    - /Purkinje/segments/b0s02[97]
    - /Purkinje/segments/b0s02[100]
    - /Purkinje/segments/b0s02[102]
    - /Purkinje/segments/b0s02[105]
    - /Purkinje/segments/b0s02[108]
    - /Purkinje/segments/b0s02[110]
    - /Purkinje/segments/b0s02[114]
    - /Purkinje/segments/b0s02[116]
    - /Purkinje/segments/b0s02[117]
    - /Purkinje/segments/b0s02[127]
    - /Purkinje/segments/b0s02[132]
    - /Purkinje/segments/b0s02[134]
    - /Purkinje/segments/b0s02[136]
    - /Purkinje/segments/b0s02[144]
    - /Purkinje/segments/b0s02[147]
    - /Purkinje/segments/b0s02[148]
    - /Purkinje/segments/b0s02[152]
    - /Purkinje/segments/b0s02[155]
    - /Purkinje/segments/b0s02[158]
    - /Purkinje/segments/b0s02[159]
    - /Purkinje/segments/b0s02[164]
    - /Purkinje/segments/b0s02[166]
    - /Purkinje/segments/b0s02[170]
    - /Purkinje/segments/b0s02[172]
    - /Purkinje/segments/b0s02[177]
    - /Purkinje/segments/b0s02[182]
    - /Purkinje/segments/b0s02[183]
    - /Purkinje/segments/b0s02[185]
    - /Purkinje/segments/b0s03[3]
    - /Purkinje/segments/b0s03[6]
    - /Purkinje/segments/b0s03[15]
    - /Purkinje/segments/b0s03[18]
    - /Purkinje/segments/b0s03[22]
    - /Purkinje/segments/b0s03[26]
    - /Purkinje/segments/b0s03[28]
    - /Purkinje/segments/b0s03[30]
    - /Purkinje/segments/b0s03[32]
    - /Purkinje/segments/b0s03[34]
    - /Purkinje/segments/b0s03[36]
    - /Purkinje/segments/b0s03[37]
    - /Purkinje/segments/b0s03[42]
    - /Purkinje/segments/b0s03[48]
    - /Purkinje/segments/b0s03[49]
    - /Purkinje/segments/b0s03[51]
    - /Purkinje/segments/b0s03[53]
    - /Purkinje/segments/b0s03[60]
    - /Purkinje/segments/b0s03[62]
    - /Purkinje/segments/b0s03[63]
    - /Purkinje/segments/b0s03[64]
    - /Purkinje/segments/b0s03[67]
    - /Purkinje/segments/b0s03[69]
    - /Purkinje/segments/b0s04[5]
    - /Purkinje/segments/b0s04[6]
    - /Purkinje/segments/b0s04[9]
    - /Purkinje/segments/b0s04[11]
    - /Purkinje/segments/b0s04[12]
    - /Purkinje/segments/b0s04[16]
    - /Purkinje/segments/b0s04[19]
    - /Purkinje/segments/b0s04[20]
    - /Purkinje/segments/b0s04[24]
    - /Purkinje/segments/b0s04[28]
    - /Purkinje/segments/b0s04[29]
    - /Purkinje/segments/b0s04[38]
    - /Purkinje/segments/b0s04[40]
    - /Purkinje/segments/b0s04[42]
    - /Purkinje/segments/b0s04[50]
    - /Purkinje/segments/b0s04[52]
    - /Purkinje/segments/b0s04[54]
    - /Purkinje/segments/b0s04[55]
    - /Purkinje/segments/b0s04[56]
    - /Purkinje/segments/b0s04[57]
    - /Purkinje/segments/b0s04[60]
    - /Purkinje/segments/b0s04[62]
    - /Purkinje/segments/b0s04[64]
    - /Purkinje/segments/b0s04[68]
    - /Purkinje/segments/b0s04[70]
    - /Purkinje/segments/b0s04[73]
    - /Purkinje/segments/b0s04[76]
    - /Purkinje/segments/b0s04[77]
    - /Purkinje/segments/b0s04[81]
    - /Purkinje/segments/b0s04[82]
    - /Purkinje/segments/b0s04[88]
    - /Purkinje/segments/b0s04[98]
    - /Purkinje/segments/b0s04[99]
    - /Purkinje/segments/b0s04[102]
    - /Purkinje/segments/b0s04[107]
    - /Purkinje/segments/b0s04[108]
    - /Purkinje/segments/b0s04[112]
    - /Purkinje/segments/b0s04[115]
    - /Purkinje/segments/b0s04[118]
    - /Purkinje/segments/b0s04[119]
    - /Purkinje/segments/b0s04[123]
    - /Purkinje/segments/b0s04[124]
    - /Purkinje/segments/b0s04[134]
    - /Purkinje/segments/b0s04[136]
    - /Purkinje/segments/b0s04[139]
    - /Purkinje/segments/b0s04[142]
    - /Purkinje/segments/b0s04[144]
    - /Purkinje/segments/b0s04[148]
    - /Purkinje/segments/b0s04[154]
    - /Purkinje/segments/b0s04[155]
    - /Purkinje/segments/b1s05[3]
    - /Purkinje/segments/b1s05[5]
    - /Purkinje/segments/b1s05[6]
    - /Purkinje/segments/b1s06[8]
    - /Purkinje/segments/b1s06[14]
    - /Purkinje/segments/b1s06[16]
    - /Purkinje/segments/b1s06[24]
    - /Purkinje/segments/b1s06[25]
    - /Purkinje/segments/b1s06[30]
    - /Purkinje/segments/b1s06[33]
    - /Purkinje/segments/b1s06[35]
    - /Purkinje/segments/b1s06[37]
    - /Purkinje/segments/b1s06[38]
    - /Purkinje/segments/b1s06[41]
    - /Purkinje/segments/b1s06[43]
    - /Purkinje/segments/b1s06[47]
    - /Purkinje/segments/b1s06[48]
    - /Purkinje/segments/b1s06[52]
    - /Purkinje/segments/b1s06[54]
    - /Purkinje/segments/b1s06[63]
    - /Purkinje/segments/b1s06[70]
    - /Purkinje/segments/b1s06[71]
    - /Purkinje/segments/b1s06[74]
    - /Purkinje/segments/b1s06[79]
    - /Purkinje/segments/b1s06[81]
    - /Purkinje/segments/b1s06[82]
    - /Purkinje/segments/b1s06[85]
    - /Purkinje/segments/b1s06[91]
    - /Purkinje/segments/b1s06[95]
    - /Purkinje/segments/b1s06[98]
    - /Purkinje/segments/b1s06[101]
    - /Purkinje/segments/b1s06[104]
    - /Purkinje/segments/b1s06[105]
    - /Purkinje/segments/b1s06[106]
    - /Purkinje/segments/b1s06[112]
    - /Purkinje/segments/b1s06[115]
    - /Purkinje/segments/b1s06[117]
    - /Purkinje/segments/b1s06[120]
    - /Purkinje/segments/b1s06[121]
    - /Purkinje/segments/b1s06[128]
    - /Purkinje/segments/b1s06[133]
    - /Purkinje/segments/b1s06[134]
    - /Purkinje/segments/b1s06[136]
    - /Purkinje/segments/b1s06[141]
    - /Purkinje/segments/b1s06[144]
    - /Purkinje/segments/b1s06[145]
    - /Purkinje/segments/b1s06[153]
    - /Purkinje/segments/b1s06[159]
    - /Purkinje/segments/b1s06[162]
    - /Purkinje/segments/b1s06[164]
    - /Purkinje/segments/b1s06[167]
    - /Purkinje/segments/b1s06[174]
    - /Purkinje/segments/b1s06[175]
    - /Purkinje/segments/b1s06[178]
    - /Purkinje/segments/b1s06[180]
    - /Purkinje/segments/b1s06[182]
    - /Purkinje/segments/b1s07[5]
    - /Purkinje/segments/b1s08[4]
    - /Purkinje/segments/b1s08[11]
    - /Purkinje/segments/b1s08[12]
    - /Purkinje/segments/b1s08[14]
    - /Purkinje/segments/b1s08[15]
    - /Purkinje/segments/b1s08[19]
    - /Purkinje/segments/b1s08[20]
    - /Purkinje/segments/b1s08[21]
    - /Purkinje/segments/b1s08[24]
    - /Purkinje/segments/b1s09[4]
    - /Purkinje/segments/b1s09[6]
    - /Purkinje/segments/b1s09[8]
    - /Purkinje/segments/b1s09[9]
    - /Purkinje/segments/b1s09[18]
    - /Purkinje/segments/b1s09[23]
    - /Purkinje/segments/b1s09[24]
    - /Purkinje/segments/b1s09[27]
    - /Purkinje/segments/b1s09[28]
    - /Purkinje/segments/b1s09[30]
    - /Purkinje/segments/b1s09[33]
    - /Purkinje/segments/b1s09[36]
    - /Purkinje/segments/b1s09[39]
    - /Purkinje/segments/b1s10[6]
    - /Purkinje/segments/b1s10[9]
    - /Purkinje/segments/b1s10[13]
    - /Purkinje/segments/b1s10[15]
    - /Purkinje/segments/b1s10[17]
    - /Purkinje/segments/b1s10[19]
    - /Purkinje/segments/b1s10[20]
    - /Purkinje/segments/b1s10[22]
    - /Purkinje/segments/b1s10[27]
    - /Purkinje/segments/b1s10[28]
    - /Purkinje/segments/b1s10[36]
    - /Purkinje/segments/b1s10[42]
    - /Purkinje/segments/b1s10[43]
    - /Purkinje/segments/b1s10[45]
    - /Purkinje/segments/b1s10[48]
    - /Purkinje/segments/b1s10[53]
    - /Purkinje/segments/b1s10[56]
    - /Purkinje/segments/b1s10[60]
    - /Purkinje/segments/b1s10[62]
    - /Purkinje/segments/b1s10[64]
    - /Purkinje/segments/b1s10[66]
    - /Purkinje/segments/b1s10[70]
    - /Purkinje/segments/b1s10[71]
    - /Purkinje/segments/b1s10[77]
    - /Purkinje/segments/b1s10[81]
    - /Purkinje/segments/b1s10[82]
    - /Purkinje/segments/b1s10[84]
    - /Purkinje/segments/b1s10[85]
    - /Purkinje/segments/b1s11[3]
    - /Purkinje/segments/b1s11[7]
    - /Purkinje/segments/b1s11[10]
    - /Purkinje/segments/b1s12[3]
    - /Purkinje/segments/b1s12[11]
    - /Purkinje/segments/b1s12[12]
    - /Purkinje/segments/b1s12[16]
    - /Purkinje/segments/b1s12[27]
    - /Purkinje/segments/b1s12[29]
    - /Purkinje/segments/b1s12[31]
    - /Purkinje/segments/b1s12[33]
    - /Purkinje/segments/b1s12[36]
    - /Purkinje/segments/b1s12[38]
    - /Purkinje/segments/b1s12[42]
    - /Purkinje/segments/b1s12[45]
    - /Purkinje/segments/b1s12[49]
    - /Purkinje/segments/b1s12[52]
    - /Purkinje/segments/b1s12[53]
    - /Purkinje/segments/b1s13[3]
    - /Purkinje/segments/b1s13[8]
    - /Purkinje/segments/b1s14[12]
    - /Purkinje/segments/b1s14[15]
    - /Purkinje/segments/b1s14[16]
    - /Purkinje/segments/b1s14[23]
    - /Purkinje/segments/b1s14[31]
    - /Purkinje/segments/b1s14[33]
    - /Purkinje/segments/b1s14[35]
    - /Purkinje/segments/b1s14[39]
    - /Purkinje/segments/b1s14[42]
    - /Purkinje/segments/b1s15[1]
    - /Purkinje/segments/b1s15[4]
    - /Purkinje/segments/b1s15[6]
    - /Purkinje/segments/b1s15[7]
    - /Purkinje/segments/b1s16[2]
    - /Purkinje/segments/b1s17[1]
    - /Purkinje/segments/b1s18[0]
    - /Purkinje/segments/b1s19[2]
    - /Purkinje/segments/b1s19[12]
    - /Purkinje/segments/b1s19[14]
    - /Purkinje/segments/b1s19[16]
    - /Purkinje/segments/b1s19[20]
    - /Purkinje/segments/b1s19[22]
    - /Purkinje/segments/b1s19[24]
    - /Purkinje/segments/b1s19[29]
    - /Purkinje/segments/b1s19[37]
    - /Purkinje/segments/b1s19[39]
    - /Purkinje/segments/b1s19[42]
    - /Purkinje/segments/b1s20[6]
    - /Purkinje/segments/b1s20[9]
    - /Purkinje/segments/b1s20[10]
    - /Purkinje/segments/b1s20[12]
    - /Purkinje/segments/b1s20[14]
    - /Purkinje/segments/b1s20[18]
    - /Purkinje/segments/b1s20[20]
    - /Purkinje/segments/b1s20[21]
    - /Purkinje/segments/b2s21[4]
    - /Purkinje/segments/b2s21[5]
    - /Purkinje/segments/b2s21[9]
    - /Purkinje/segments/b2s21[15]
    - /Purkinje/segments/b2s21[17]
    - /Purkinje/segments/b2s21[20]
    - /Purkinje/segments/b2s21[22]
    - /Purkinje/segments/b2s21[24]
    - /Purkinje/segments/b2s22[4]
    - /Purkinje/segments/b2s22[7]
    - /Purkinje/segments/b2s22[8]
    - /Purkinje/segments/b2s22[11]
    - /Purkinje/segments/b2s22[12]
    - /Purkinje/segments/b2s23[4]
    - /Purkinje/segments/b2s23[8]
    - /Purkinje/segments/b2s23[13]
    - /Purkinje/segments/b2s23[15]
    - /Purkinje/segments/b2s23[16]
    - /Purkinje/segments/b2s23[20]
    - /Purkinje/segments/b2s23[25]
    - /Purkinje/segments/b2s23[27]
    - /Purkinje/segments/b2s24[4]
    - /Purkinje/segments/b2s24[6]
    - /Purkinje/segments/b2s25[4]
    - /Purkinje/segments/b2s25[8]
    - /Purkinje/segments/b2s25[10]
    - /Purkinje/segments/b2s25[14]
    - /Purkinje/segments/b2s25[16]
    - /Purkinje/segments/b2s25[18]
    - /Purkinje/segments/b2s25[22]
    - /Purkinje/segments/b2s25[25]
    - /Purkinje/segments/b2s25[27]
    - /Purkinje/segments/b2s25[28]
    - /Purkinje/segments/b2s25[31]
    - /Purkinje/segments/b2s25[33]
    - /Purkinje/segments/b2s25[34]
    - /Purkinje/segments/b2s26[3]
    - /Purkinje/segments/b2s26[6]
    - /Purkinje/segments/b2s26[10]
    - /Purkinje/segments/b2s26[11]
    - /Purkinje/segments/b2s26[15]
    - /Purkinje/segments/b2s26[19]
    - /Purkinje/segments/b2s26[20]
    - /Purkinje/segments/b2s26[23]
    - /Purkinje/segments/b2s26[24]
    - /Purkinje/segments/b2s26[27]
    - /Purkinje/segments/b2s26[29]
    - /Purkinje/segments/b2s26[30]
    - /Purkinje/segments/b2s26[33]
    - /Purkinje/segments/b2s26[34]
    - /Purkinje/segments/b2s26[35]
    - /Purkinje/segments/b2s27[4]
    - /Purkinje/segments/b2s27[6]
    - /Purkinje/segments/b2s27[7]
    - /Purkinje/segments/b2s27[10]
    - /Purkinje/segments/b2s27[14]
    - /Purkinje/segments/b2s27[16]
    - /Purkinje/segments/b2s27[22]
    - /Purkinje/segments/b2s27[24]
    - /Purkinje/segments/b2s27[26]
    - /Purkinje/segments/b2s27[33]
    - /Purkinje/segments/b2s27[34]
    - /Purkinje/segments/b2s27[39]
    - /Purkinje/segments/b2s27[41]
    - /Purkinje/segments/b2s27[45]
    - /Purkinje/segments/b2s27[47]
    - /Purkinje/segments/b2s28[4]
    - /Purkinje/segments/b2s28[7]
    - /Purkinje/segments/b2s28[14]
    - /Purkinje/segments/b2s28[15]
    - /Purkinje/segments/b2s28[17]
    - /Purkinje/segments/b2s28[20]
    - /Purkinje/segments/b2s29[5]
    - /Purkinje/segments/b2s29[9]
    - /Purkinje/segments/b2s29[13]
    - /Purkinje/segments/b2s29[17]
    - /Purkinje/segments/b2s29[18]
    - /Purkinje/segments/b2s29[20]
    - /Purkinje/segments/b2s29[24]
    - /Purkinje/segments/b2s29[28]
    - /Purkinje/segments/b2s29[29]
    - /Purkinje/segments/b2s29[33]
    - /Purkinje/segments/b2s29[34]
    - /Purkinje/segments/b2s29[38]
    - /Purkinje/segments/b2s29[41]
    - /Purkinje/segments/b2s30[6]
    - /Purkinje/segments/b2s30[7]
    - /Purkinje/segments/b2s30[9]
    - /Purkinje/segments/b2s30[13]
    - /Purkinje/segments/b2s30[15]
    - /Purkinje/segments/b2s30[18]
    - /Purkinje/segments/b2s30[21]
    - /Purkinje/segments/b2s30[22]
    - /Purkinje/segments/b2s30[23]
    - /Purkinje/segments/b2s31[2]
    - /Purkinje/segments/b2s31[3]
    - /Purkinje/segments/b2s32[1]
    - /Purkinje/segments/b2s33[3]
    - /Purkinje/segments/b2s33[6]
    - /Purkinje/segments/b2s34[5]
    - /Purkinje/segments/b2s34[8]
    - /Purkinje/segments/b2s34[9]
    - /Purkinje/segments/b3s35[3]
    - /Purkinje/segments/b3s35[10]
    - /Purkinje/segments/b3s35[13]
    - /Purkinje/segments/b3s35[17]
    - /Purkinje/segments/b3s35[20]
    - /Purkinje/segments/b3s36[4]
    - /Purkinje/segments/b3s36[8]
    - /Purkinje/segments/b3s36[9]
    - /Purkinje/segments/b3s37[5]
    - /Purkinje/segments/b3s37[10]
    - /Purkinje/segments/b3s37[11]
    - /Purkinje/segments/b3s37[13]
    - /Purkinje/segments/b3s37[14]
    - /Purkinje/segments/b3s37[16]
    - /Purkinje/segments/b3s37[17]
    - /Purkinje/segments/b3s37[23]
    - /Purkinje/segments/b3s37[25]
    - /Purkinje/segments/b3s37[28]
    - /Purkinje/segments/b3s37[32]
    - /Purkinje/segments/b3s37[33]
    - /Purkinje/segments/b3s37[35]
    - /Purkinje/segments/b3s37[39]
    - /Purkinje/segments/b3s37[41]
    - /Purkinje/segments/b3s38[4]
    - /Purkinje/segments/b3s39[5]
    - /Purkinje/segments/b3s39[10]
    - /Purkinje/segments/b3s39[13]
    - /Purkinje/segments/b3s40[3]
    - /Purkinje/segments/b3s40[6]
    - /Purkinje/segments/b3s40[7]
    - /Purkinje/segments/b3s41[3]
    - /Purkinje/segments/b3s41[7]
    - /Purkinje/segments/b3s41[8]
    - /Purkinje/segments/b3s41[9]
    - /Purkinje/segments/b3s42[3]
    - /Purkinje/segments/b3s43[3]
    - /Purkinje/segments/b3s43[4]
    - /Purkinje/segments/b3s43[5]
    - /Purkinje/segments/b3s44[4]
    - /Purkinje/segments/b3s44[8]
    - /Purkinje/segments/b3s44[9]
    - /Purkinje/segments/b3s44[13]
    - /Purkinje/segments/b3s44[15]
    - /Purkinje/segments/b3s44[20]
    - /Purkinje/segments/b3s44[23]
    - /Purkinje/segments/b3s44[25]
    - /Purkinje/segments/b3s44[29]
    - /Purkinje/segments/b3s44[35]
    - /Purkinje/segments/b3s44[36]
    - /Purkinje/segments/b3s44[37]
    - /Purkinje/segments/b3s44[42]
    - /Purkinje/segments/b3s44[48]
    - /Purkinje/segments/b3s44[49]
    - /Purkinje/segments/b3s45[3]
    - /Purkinje/segments/b3s45[9]
    - /Purkinje/segments/b3s45[11]
    - /Purkinje/segments/b3s45[18]
    - /Purkinje/segments/b3s45[19]
    - /Purkinje/segments/b3s45[23]
    - /Purkinje/segments/b3s45[28]
    - /Purkinje/segments/b3s45[31]
    - /Purkinje/segments/b3s45[32]
    - /Purkinje/segments/b3s45[35]
    - /Purkinje/segments/b3s45[39]
    - /Purkinje/segments/b3s45[40]
    - /Purkinje/segments/b3s45[41]
    - /Purkinje/segments/b3s46[4]
    - /Purkinje/segments/b3s46[6]
    - /Purkinje/segments/b3s46[12]
    - /Purkinje/segments/b3s46[15]

6. Examination of branchpoints of the purkinje cell without spines

Startup command : ./neurospacesparse -q -R -A legacy/cells/purk2m9s.ndf

6.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

6.2. Can we set the segmentation base ?

1. Executed command	segmentersetbase /Purkinje
2. Part of expected output	neurospaces

6.3. Can we get information on the dendritic branchpoints (soma) ?

1. Executed command	printparameter /Purkinje/segments/soma BRANCHPOINT
2. Part of expected output	value = 0

6.4. Can we get information on the branch order (soma) ?

1. Executed command	printparameter /Purkinje/segments/soma SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 0

6.5. Can we get information on the dendritic branchpoints (main[0]) ?

1. Executed command	printparameter /Purkinje/segments/main[0] BRANCHPOINT
2. Part of expected output	value = 0

6.6. Can we get information on the branch order (main[0]) ?

1. Executed command	printparameter /Purkinje/segments/main[0] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 0

6.7. Can we get information on the dendritic branchpoints (main[1]) ?

1. Executed command	printparameter /Purkinje/segments/main[1] BRANCHPOINT
2. Part of expected output	value = 1

6.8. Can we get information on the branch order (main[1]) ?

1. Executed command	printparameter /Purkinje/segments/main[1] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 1

6.9. Can we get information on the dendritic branchpoints (main[2]) ?

1. Executed command	printparameter /Purkinje/segments/main[2] BRANCHPOINT
2. Part of expected output	value = 1

6.10. Can we get information on the branch order (main[2]) ?

1. Executed command	printparameter /Purkinje/segments/main[2] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

6.11. Can we get information on the dendritic branchpoints (main[3]) ?

1. Executed command	printparameter /Purkinje/segments/main[3] BRANCHPOINT
2. Part of expected output	value = 0

6.12. Can we get information on the branch order (main[3]) ?

1. Executed command	printparameter /Purkinje/segments/main[3] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

6.13. Can we get information on the dendritic branchpoints (main[4]) ?

1. Executed command	printparameter /Purkinje/segments/main[4] BRANCHPOINT
2. Part of expected output	value = 0

6.14. Can we get information on the branch order (main[4]) ?

1. Executed command	printparameter /Purkinje/segments/main[4] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

6.15. Can we get information on the dendritic branchpoints (main[5]) ?

1. Executed command	printparameter /Purkinje/segments/main[5] BRANCHPOINT
2. Part of expected output	value = 1

6.16. Can we get information on the branch order (main[5]) ?

1. Executed command	printparameter /Purkinje/segments/main[5] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 3

6.17. Can we get information on the dendritic branchpoints (main[6]) ?

1. Executed command	printparameter /Purkinje/segments/main[6] BRANCHPOINT
2. Part of expected output	value = 1

6.18. Can we get information on the branch order (main[6]) ?

1. Executed command	printparameter /Purkinje/segments/main[6] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 4

6.19. Can we get information on the dendritic branchpoints (main[7]) ?

1. Executed command	printparameter /Purkinje/segments/main[7] BRANCHPOINT
2. Part of expected output	value = 0

6.20. Can we get information on the branch order (main[7]) ?

1. Executed command	printparameter /Purkinje/segments/main[7] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 4

6.21. Can we get information on the dendritic branchpoints (main[8]) ?

1. Executed command	printparameter /Purkinje/segments/main[8] BRANCHPOINT
2. Part of expected output	value = 1

6.22. Can we get information on the branch order (main[8]) ?

1. Executed command	printparameter /Purkinje/segments/main[8] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 5

6.23. Can we get information on the branch order of dendritic terminals (b0s01[6]) ?

1. Executed command	printparameter /Purkinje/segments/b0s01[6] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 5

6.24. Can we get information on the branch order of dendritic terminals (b0s02[172]) ?

1. Executed command	printparameter /Purkinje/segments/b0s02[172] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 13

6.25. Can we get information on the branch order of dendritic terminals (b0s04[102]) ?

1. Executed command	printparameter /Purkinje/segments/b0s04[102] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 17

6.26. Can we get information on the branch order of dendritic terminals (b1s06[144]) ?

1. Executed command	printparameter /Purkinje/segments/b1s06[144] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 15

6.27. Can we get information on the branch order of dendritic terminals (b1s10[84]) ?

1. Executed command	printparameter /Purkinje/segments/b1s10[84] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 19

6.28. Can we get information on the branch order of dendritic terminals (b2s21[17]) ?

1. Executed command	printparameter /Purkinje/segments/b2s21[17] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 11

6.29. Can we get information on the branch order of dendritic terminals (b2s27[47]) ?

1. Executed command	printparameter /Purkinje/segments/b2s27[47] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 16

6.30. Can we get information on the branch order of dendritic terminals (b3s39[5]) ?

1. Executed command	printparameter /Purkinje/segments/b3s39[5] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 18

6.31. Can we get information on the branch order of dendritic terminals (b3s46[15]) ?

1. Executed command	printparameter /Purkinje/segments/b3s46[15] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 24

7. Examination of branchpoints of the purkinje cell without spines

Startup command : ./neurospacesparse -q -R -A cells/purkinje/edsjb1994.ndf

7.1. Is neurospaces startup successful ?

1. Part of expected output

neurospaces

7.2. Can we set the segmentation base ?

1. Executed command	segmentersetbase /Purkinje
2. Part of expected output	neurospaces

7.3. Can we get information on the dendritic branchpoints (soma) ?

1. Executed command	printparameter /Purkinje/segments/soma BRANCHPOINT
2. Part of expected output	value = 0

7.4. Can we get information on the branch order (soma) ?

1. Executed command	printparameter /Purkinje/segments/soma SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 0

7.5. Can we get information on the dendritic branchpoints (main[0]) ?

1. Executed command	printparameter /Purkinje/segments/main[0] BRANCHPOINT
2. Part of expected output	value = 0

7.6. Can we get information on the branch order (main[0]) ?

1. Executed command	printparameter /Purkinje/segments/main[0] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 0

7.7. Can we get information on the dendritic branchpoints (main[1]) ?

1. Executed command	printparameter /Purkinje/segments/main[1] BRANCHPOINT
2. Part of expected output	value = 1

7.8. Can we get information on the branch order (main[1]) ?

1. Executed command	printparameter /Purkinje/segments/main[1] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 1

7.9. Can we get information on the dendritic branchpoints (main[2]) ?

1. Executed command	printparameter /Purkinje/segments/main[2] BRANCHPOINT
2. Part of expected output	value = 1

7.10. Can we get information on the branch order (main[2]) ?

1. Executed command	printparameter /Purkinje/segments/main[2] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

7.11. Can we get information on the dendritic branchpoints (main[3]) ?

1. Executed command	printparameter /Purkinje/segments/main[3] BRANCHPOINT
2. Part of expected output	value = 0

7.12. Can we get information on the branch order (main[3]) ?

1. Executed command	printparameter /Purkinje/segments/main[3] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

7.13. Can we get information on the dendritic branchpoints (main[4]) ?

1. Executed command	printparameter /Purkinje/segments/main[4] BRANCHPOINT
2. Part of expected output	value = 0

7.14. Can we get information on the branch order (main[4]) ?

1. Executed command	printparameter /Purkinje/segments/main[4] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 2

7.15. Can we get information on the dendritic branchpoints (main[5]) ?

1. Executed command	printparameter /Purkinje/segments/main[5] BRANCHPOINT
2. Part of expected output	value = 1

7.16. Can we get information on the branch order (main[5]) ?

1. Executed command	printparameter /Purkinje/segments/main[5] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 3

7.17. Can we get information on the dendritic branchpoints (main[6]) ?

1. Executed command	printparameter /Purkinje/segments/main[6] BRANCHPOINT
2. Part of expected output	value = 1

7.18. Can we get information on the branch order (main[6]) ?

1. Executed command	printparameter /Purkinje/segments/main[6] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 4

7.19. Can we get information on the dendritic branchpoints (main[7]) ?

1. Executed command	printparameter /Purkinje/segments/main[7] BRANCHPOINT
2. Part of expected output	value = 0

7.20. Can we get information on the branch order (main[7]) ?

1. Executed command	printparameter /Purkinje/segments/main[7] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 4

7.21. Can we get information on the dendritic branchpoints (main[8]) ?

1. Executed command	printparameter /Purkinje/segments/main[8] BRANCHPOINT
2. Part of expected output	value = 1

7.22. Can we get information on the branch order (main[8]) ?

1. Executed command	printparameter /Purkinje/segments/main[8] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 5

7.23. Can we get information on the branch order of dendritic terminals (b0s01[6]) ?

1. Executed command	printparameter /Purkinje/segments/b0s01[6] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 5

7.24. Can we get information on the branch order of dendritic terminals (b0s02[172]) ?

1. Executed command	printparameter /Purkinje/segments/b0s02[172] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 13

7.25. Can we get information on the branch order of dendritic terminals (b0s04[102]) ?

1. Executed command	printparameter /Purkinje/segments/b0s04[102] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 17

7.26. Can we get information on the branch order of dendritic terminals (b1s06[144]) ?

1. Executed command	printparameter /Purkinje/segments/b1s06[144] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 15

7.27. Can we get information on the branch order of dendritic terminals (b1s10[84]) ?

1. Executed command	printparameter /Purkinje/segments/b1s10[84] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 19

7.28. Can we get information on the branch order of dendritic terminals (b2s21[17]) ?

1. Executed command	printparameter /Purkinje/segments/b2s21[17] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 11

7.29. Can we get information on the branch order of dendritic terminals (b2s27[47]) ?

1. Executed command	printparameter /Purkinje/segments/b2s27[47] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 16

7.30. Can we get information on the branch order of dendritic terminals (b3s39[5]) ?

1. Executed command	printparameter /Purkinje/segments/b3s39[5] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 18

7.31. Can we get information on the branch order of dendritic terminals (b3s46[15]) ?

1. Executed command	printparameter /Purkinje/segments/b3s46[15] SOMATOPETAL_BRANCHPOINTS
2. Part of expected output	value = 24