Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/nesting

Index
Up

nesting of networks

1. Population, cell count, projections and connections

1. Population, cell count, projections and connections

Startup command : ./neurospacesparse -v 1 -q legacy/networks/supernetwork.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output 
./neurospacesparse: No errors for .+?/legacy/networks/supernetwork.ndf.

1.2. What is the root namespace ?

1. Executed command
namespaces
2. Part of expected output 
File (/tmp/neurospaces/test/models/legacy/networks/network.ndf) --> Namespace (Network_base::)

1.3. What are the nested namespaces ?

1. Executed command
namespaces Network_base::
2. Part of expected output 
File (/tmp/neurospaces/test/models/fibers/mossyfiber.ndf) --> Namespace (Fibers::)
File (/tmp/neurospaces/test/models/legacy/populations/golgi.ndf) --> Namespace (Golgi::)
File (/tmp/neurospaces/test/models/legacy/populations/granule.ndf) --> Namespace (Granule::)
File (/tmp/neurospaces/test/models/legacy/populations/purkinje.ndf) --> Namespace (Purkinje::)

1.4. Do we find subnetworks and no inputs in the main network ?

1. Executed command
childreninfo /CerebellarCortex
2. Part of expected output 
children (if any) :
Child 0 : NetworkGrid,T_sym_algorithm
Child 1 : 0,T_sym_network
Child 2 : 1,T_sym_network
Child 3 : 2,T_sym_network
Child 4 : 3,T_sym_network
Child 5 : 4,T_sym_network
Child 6 : 5,T_sym_network
Child 7 : 6,T_sym_network
Child 8 : 7,T_sym_network
Child 9 : 8,T_sym_network
inputs (if any) :
 neurospaces

1.5. How many cells do we have in total ?

1. Executed command
cellcount /CerebellarCortex
2. Part of expected output 
56394

1.6. How many cells do we have in network 0 ?

1. Executed command
cellcount /CerebellarCortex/0
2. Part of expected output 
6266

1.7. How many cells do we have in network 1 ?

1. Executed command
cellcount /CerebellarCortex/1
2. Part of expected output 
6266

1.8. How many cells do we have in network 2 ?

1. Executed command
cellcount /CerebellarCortex/2
2. Part of expected output 
6266

1.9. How many cells do we have in network 3 ?

1. Executed command
cellcount /CerebellarCortex/3
2. Part of expected output 
6266

1.10. How many cells do we have in network 4 ?

1. Executed command
cellcount /CerebellarCortex/4
2. Part of expected output 
6266

1.11. How many cells do we have in network 5 ?

1. Executed command
cellcount /CerebellarCortex/5
2. Part of expected output 
6266

1.12. How many cells do we have in network 6 ?

1. Executed command
cellcount /CerebellarCortex/6
2. Part of expected output 
6266

1.13. How many cells do we have in network 7 ?

1. Executed command
cellcount /CerebellarCortex/7
2. Part of expected output 
6266

1.14. How many cells do we have in network 8 ?

1. Executed command
cellcount /CerebellarCortex/8
2. Part of expected output 
6266

1.15. How many segments do we have in total ?

1. Executed command
segmentcount /CerebellarCortex
2. Part of expected output 
301932

1.16. How many segments do we have in network 0 ?

1. Executed command
segmentcount /CerebellarCortex/0
2. Part of expected output 
33548

1.17. How many segments do we have in network 1 ?

1. Executed command
segmentcount /CerebellarCortex/1
2. Part of expected output 
33548

1.18. How many segments do we have in network 2 ?

1. Executed command
segmentcount /CerebellarCortex/2
2. Part of expected output 
33548

1.19. How many segments do we have in network 3 ?

1. Executed command
segmentcount /CerebellarCortex/3
2. Part of expected output 
33548

1.20. How many segments do we have in network 4 ?

1. Executed command
segmentcount /CerebellarCortex/4
2. Part of expected output 
33548

1.21. How many segments do we have in network 5 ?

1. Executed command
segmentcount /CerebellarCortex/5
2. Part of expected output 
33548

1.22. How many segments do we have in network 6 ?

1. Executed command
segmentcount /CerebellarCortex/6
2. Part of expected output 
33548

1.23. How many segments do we have in network 7 ?

1. Executed command
segmentcount /CerebellarCortex/7
2. Part of expected output 
33548

1.24. How many segments do we have in network 8 ?

1. Executed command
segmentcount /CerebellarCortex/8
2. Part of expected output 
33548

1.25. Can we succesfully initialize a projectionquery that indexes all projections ?

1. Executed command
pqsetall c
2. Part of expected output 
caching = yes

1.26. Can we succesfully reinitialize a projectionquery that indexes all projections ?

1. Executed command
pqsetall c
2. Part of expected output 
caching = yes

1.27. Can we succesfully reinitialize a projectionquery that indexes all projections ?

1. Executed command
pqsetall c
2. Part of expected output 
caching = yes

1.28. How many connections do we have on the first subnetwork, second mossy fiber ?

1. Executed command
pqcount c /CerebellarCortex/0/MossyFibers/1/spikegen
2. Part of expected output 
#connections = 1060

1.29. How many connections do we have on the first subnetwork, granule cell 5481, mossy fiber AMPA channel ?

1. Executed command
pqcount c /CerebellarCortex/0/Granules/5481/Granule_soma/mf_AMPA/synapse
2. Part of expected output 
#connections = 4

1.30. How many connections do we have on the first subnetwork, granule cell 481, mossy fiber AMPA channel ?

1. Executed command
pqcount c /CerebellarCortex/0/Granules/481/Granule_soma/mf_AMPA/synapse
2. Part of expected output 
#connections = 4

1.31. What is the number of connections on the AMPA channel of the first Golgi cell in network 0 ?

1. Executed command
spikereceivercount /CerebellarCortex/0/ForwardProjection /CerebellarCortex/0/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.32. What is the number of connections on the AMPA channel of the first Golgi cell in network 1 ?

1. Executed command
spikereceivercount /CerebellarCortex/1/ForwardProjection /CerebellarCortex/1/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.33. What is the number of connections on the AMPA channel of the first Golgi cell in network 2 ?

1. Executed command
spikereceivercount /CerebellarCortex/2/ForwardProjection /CerebellarCortex/2/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.34. What is the number of connections on the AMPA channel of the first Golgi cell in network 3 ?

1. Executed command
spikereceivercount /CerebellarCortex/3/ForwardProjection /CerebellarCortex/3/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.35. What is the number of connections on the AMPA channel of the first Golgi cell in network 4 ?

1. Executed command
spikereceivercount /CerebellarCortex/4/ForwardProjection /CerebellarCortex/4/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.36. What is the number of connections on the AMPA channel of the first Golgi cell in network 5 ?

1. Executed command
spikereceivercount /CerebellarCortex/5/ForwardProjection /CerebellarCortex/5/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.37. What is the number of connections on the AMPA channel of the first Golgi cell in network 6 ?

1. Executed command
spikereceivercount /CerebellarCortex/6/ForwardProjection /CerebellarCortex/6/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.38. What is the number of connections on the AMPA channel of the first Golgi cell in network 7 ?

1. Executed command
spikereceivercount /CerebellarCortex/7/ForwardProjection /CerebellarCortex/7/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.39. What is the number of connections on the AMPA channel of the first Golgi cell in network 8 ?

1. Executed command
spikereceivercount /CerebellarCortex/8/ForwardProjection /CerebellarCortex/8/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

1.40. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 0 and 1 ?

1. Executed command
spikereceivercount /CerebellarCortex/0/ForwardProjection /CerebellarCortex/1/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.41. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 1 and 2 ?

1. Executed command
spikereceivercount /CerebellarCortex/1/ForwardProjection /CerebellarCortex/2/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.42. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 2 and 3 ?

1. Executed command
spikereceivercount /CerebellarCortex/2/ForwardProjection /CerebellarCortex/3/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.43. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 3 and 4 ?

1. Executed command
spikereceivercount /CerebellarCortex/3/ForwardProjection /CerebellarCortex/4/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.44. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 4 and 5 ?

1. Executed command
spikereceivercount /CerebellarCortex/4/ForwardProjection /CerebellarCortex/5/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.45. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 5 and 6 ?

1. Executed command
spikereceivercount /CerebellarCortex/5/ForwardProjection /CerebellarCortex/6/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.46. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 6 and 7 ?

1. Executed command
spikereceivercount /CerebellarCortex/6/ForwardProjection /CerebellarCortex/7/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.47. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 7 and 8 ?

1. Executed command
spikereceivercount /CerebellarCortex/7/ForwardProjection /CerebellarCortex/8/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0

1.48. What is the number of connections on the AMPA channel of the first Golgi cell if we cross network 8 and 0 ?

1. Executed command
spikereceivercount /CerebellarCortex/8/ForwardProjection /CerebellarCortex/0/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 0