Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/meshing


Index
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meshing algorithms

1. Meshing of simple segments
2. Meshing of simple segments
3. Meshing of simple segments
4. Meshing of simple segments
5. Meshing of the purkinje cell morphology

1. Meshing of simple segments

Startup command : ./neurospacesparse -q -R utilities/some_segments.ndf


1.1. Is neurospaces startup successful ?

1. Part of expected output
neurospaces 

1.2. What are the original two segments (1) ?

1. Executed command
printinfo /two_segments
2. Part of expected output
    Name, index (two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (soma,-1)
        Type (T_sym_segment)
        segmenName, index (soma,-1)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
        Name, index (main[0],-1)
        Type (T_sym_segment)
        segmenName, index (main[0],-1)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

1.3. Can we mesh a neuron model with two segments ?

1. Executed command
mesh /two_segments 1e-5
2. Part of expected output
neurospaces 

1.4. What is the result of meshing the two segments, have they been replaced with new segments with correct aliassing ?

1. Executed command
printinfo /two_segments
2. Part of expected output
    Name, index (two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (soma,-1)
        Type (T_sym_segment)
        segmenName, index (soma,-1)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (soma,-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_0,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_0,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(2.778500e-06)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_1,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_1,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-3.320000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(2.778500e-06)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_0
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

2. Meshing of simple segments

Startup command : ./neurospacesparse -q -R utilities/some_segments.ndf


2.1. Is neurospaces startup successful ?

1. Part of expected output
neurospaces 

2.2. What are the original two segments (2) ?

1. Executed command
printinfo /two_segments
2. Part of expected output
    Name, index (two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (soma,-1)
        Type (T_sym_segment)
        segmenName, index (soma,-1)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
        Name, index (main[0],-1)
        Type (T_sym_segment)
        segmenName, index (main[0],-1)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

2.3. Can we mesh a neuron model with two segments ?

1. Executed command
mesh /two_segments 1e-6
2. Part of expected output
neurospaces 

2.4. What is the result of meshing the two segments, have new segments been inserted with correct aliassing ?

1. Executed command
printinfo /two_segments
2. Part of expected output
    Name, index (two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (soma,-1)
        Type (T_sym_segment)
        segmenName, index (soma,-1)
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (soma,-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_0,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_0,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_1,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_1,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.248000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_0
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_2,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_2,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(4.776000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_1
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_3,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_3,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.304000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_2
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_4,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_4,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(1.832000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_3
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_5,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_5,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.600000e-07)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_4
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_6,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_6,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-1.112000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_5
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_7,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_7,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-2.584000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_6
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_8,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_8,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-4.056000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_7
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_9,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_9,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-5.528000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_8
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_10,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_10,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-7.000000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_9
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_11,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_11,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-8.472000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_10
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_12,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_12,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-9.944000e-06)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_11
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_13,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_13,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-1.141600e-05)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_12
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        Name, index (main[0]_14,-1)
        Type (T_sym_segment)
        segmenName, index (main[0]_14,-1)
            PARA  Name (DIA)
            PARA  Type (TYPE_PARA_NUMBER), Value(-1.288800e-05)
            PARA  Name (rel_Z)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_Y)
            PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
            PARA  Name (rel_X)
            PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
            PARA  Name (PARENT)
            PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_13
        segmen{-- begin HIER sections ---
        segmen}--  end  HIER sections ---
            segmenName, index (main[0],-1)
                PARA  Name (LENGTH)
                PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

3. Meshing of simple segments

Startup command : ./neurospacesparse -q -R utilities/some_segments.ndf


3.1. Is neurospaces startup successful ?

1. Part of expected output
neurospaces 

3.2. What are the original two segments (3) ?

1. Executed command
printinfo /grouped_two_segments
2. Part of expected output
    Name, index (grouped_two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (grouped_two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (segments,-1)
        Type (T_sym_v_segment)
        v_segmName, index (segments,-1)
        v_segm{-- begin HIER sections ---
            Name, index (soma,-1)
            Type (T_sym_segment)
            segmenName, index (soma,-1)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
            Name, index (main[0],-1)
            Type (T_sym_segment)
            segmenName, index (main[0],-1)
                PARA  Name (Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        v_segm}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

3.3. Can we mesh a neuron model with two segments ?

1. Executed command
mesh /grouped_two_segments 1e-5
2. Part of expected output
neurospaces 

3.4. What is the result of meshing the two grouped segments, have they been replaced with new segments with correct aliassing ?

1. Executed command
printinfo /grouped_two_segments
2. Part of expected output
    Name, index (grouped_two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (grouped_two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (segments,-1)
        Type (T_sym_v_segment)
        v_segmName, index (segments,-1)
        v_segm{-- begin HIER sections ---
            Name, index (soma,-1)
            Type (T_sym_segment)
            segmenName, index (soma,-1)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (soma,-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_0,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_0,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.778500e-06)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_1,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_1,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(-3.320000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(4.723500e-06)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.778500e-06)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_0
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
        v_segm}--  end  HIER sections ---
            v_segmName, index (segments,-1)
            v_segm{-- begin HIER sections ---
            v_segm}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

4. Meshing of simple segments

Startup command : ./neurospacesparse -q -R utilities/some_segments.ndf


4.1. Is neurospaces startup successful ?

1. Part of expected output
neurospaces 

4.2. What are the original two segments (4) ?

1. Executed command
printinfo /grouped_two_segments
2. Part of expected output
    Name, index (grouped_two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (grouped_two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (segments,-1)
        Type (T_sym_v_segment)
        v_segmName, index (segments,-1)
        v_segm{-- begin HIER sections ---
            Name, index (soma,-1)
            Type (T_sym_segment)
            segmenName, index (soma,-1)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
            Name, index (main[0],-1)
            Type (T_sym_segment)
            segmenName, index (main[0],-1)
                PARA  Name (Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
        v_segm}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

4.3. Can we mesh a neuron model with two segments ?

1. Executed command
mesh /grouped_two_segments 1e-6
2. Part of expected output
neurospaces 

4.4. What is the result of meshing the two grouped segments, have new segments been inserted with correct aliassing ?

1. Executed command
printinfo /grouped_two_segments
2. Part of expected output
    Name, index (grouped_two_segments,-1)
    Type (T_sym_cell)
    cell  Name, index (grouped_two_segments,-1)
    cell  {-- begin HIER sections ---
        Name, index (segments,-1)
        Type (T_sym_v_segment)
        v_segmName, index (segments,-1)
        v_segm{-- begin HIER sections ---
            Name, index (soma,-1)
            Type (T_sym_segment)
            segmenName, index (soma,-1)
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (soma,-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(0.000000e+00)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(2.980000e-05)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_0,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_0,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_1,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_1,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.248000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_0
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_2,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_2,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(4.776000e-06)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_1
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
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                segmen}--  end  HIER sections ---
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            Type (T_sym_segment)
            segmenName, index (main[0]_4,-1)
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                segmenName, index (main[0],-1)
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                segmen}--  end  HIER sections ---
            Name, index (main[0]_6,-1)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
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                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
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                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
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                segmenName, index (main[0],-1)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
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            Name, index (main[0]_8,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_8,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(-4.056000e-06)
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                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
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                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
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            segmen{-- begin HIER sections ---
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
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                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
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            Type (T_sym_segment)
            segmenName, index (main[0]_9,-1)
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                PARA  Type (TYPE_PARA_NUMBER), Value(-5.528000e-06)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
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            Type (T_sym_segment)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
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                    PARA  Name (rel_Z)
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            Type (T_sym_segment)
            segmenName, index (main[0]_11,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(-8.472000e-06)
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                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
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                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
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                    PARA  Name (rel_Z)
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            Name, index (main[0]_12,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_12,-1)
                PARA  Name (DIA)
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                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
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                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
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                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
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            Name, index (main[0]_13,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_13,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(-1.141600e-05)
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                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
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                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
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                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
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                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
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                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
            Name, index (main[0]_14,-1)
            Type (T_sym_segment)
            segmenName, index (main[0]_14,-1)
                PARA  Name (DIA)
                PARA  Type (TYPE_PARA_NUMBER), Value(-1.288800e-05)
                PARA  Name (rel_Z)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_Y)
                PARA  Type (TYPE_PARA_NUMBER), Value(6.298000e-07)
                PARA  Name (rel_X)
                PARA  Type (TYPE_PARA_NUMBER), Value(3.704667e-07)
                PARA  Name (PARENT)
                PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../main[0]_13
            segmen{-- begin HIER sections ---
            segmen}--  end  HIER sections ---
                segmenName, index (main[0],-1)
                    PARA  Name (LENGTH)
                    PARA  Type (TYPE_PARA_NUMBER), Value(1.446969e-05)
                    PARA  Name (Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (PARENT)
                    PARA  Type (TYPE_PARA_SYMBOLIC), Value : ../soma
                    PARA  Name (rel_X)
                    PARA  Type (TYPE_PARA_NUMBER), Value(5.557000e-06)
                    PARA  Name (rel_Y)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (rel_Z)
                    PARA  Type (TYPE_PARA_NUMBER), Value(9.447000e-06)
                    PARA  Name (DIA)
                    PARA  Type (TYPE_PARA_NUMBER), Value(7.720000e-06)
                segmen{-- begin HIER sections ---
                segmen}--  end  HIER sections ---
        v_segm}--  end  HIER sections ---
            v_segmName, index (segments,-1)
            v_segm{-- begin HIER sections ---
            v_segm}--  end  HIER sections ---
    cell  }--  end  HIER sections ---

5. Meshing of the purkinje cell morphology

Startup command : ./neurospacesparse -q -R cells/purkinje/edsjb1994.ndf


5.1. Is neurospaces startup successful ?

1. Part of expected output
neurospaces 

5.2. Can we remesh the purkinje cell morphology ?

1. Executed command
mesh /Purkinje 1e-6
2. Part of expected output
neurospaces
3. Comment
this command currently uses some algorithm meta info underway, harmless but should be fixed nevertheless, sometime.

5.3. How many segments are in the result ?

1. Executed command
segmentcount /Purkinje
2. Part of expected output
Number of segments : 15789
3. This test is currently not executed
(disabled is 'this result needs a thorough check')