neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/errors

Index
Up

various error conditions

1. Unrecognized querymachine command

2. Model description file not found

3. Wildcard expansion, but without any match

4. Parameters with unresolved dependencies

5. Parameters with circular dependencies

6. A simple syntax error

7. Resolving the conductance of an isolated channel

8. Resolving beta for an isolated pool

9. Function parameters

10. Invalid queries over symbol table structure

11. Incomplete parameters for the inserter algorithm

12. Invalid parent segment parameter specifications

13. Error message when attempt to expand symbols without a selector

1. Unrecognized querymachine command

Startup command : ./neurospacesparse -v 1 -q -R segments/purkinje_maind_passive.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output

./neurospacesparse: No errors for .+?/segments/purkinje_maind_passive.ndf.

1.2. Do we get sensible feedback after an unrecognized querymachine command ?

1. Executed command	abcdefg
2. Part of expected output	unrecognized command 'abcdefg'

2. Model description file not found

Startup command : ./neurospacesparse -q -R cannot be found

2.1. Is neurospaces startup successful ?

1. Part of expected output

Could not find file (number 0, 0), path name (cannot be found)
Set one of the environment variables NEUROSPACES_NMC_USER_MODELS,
NEUROSPACES_NMC_PROJECT_MODELS, NEUROSPACES_NMC_SYSTEM_MODELS or NEUROSPACES_NMC_MODELS
to point to a library where the required model is located,
or use the -m switch to configure where neurospaces looks for models.

2.2. A single symbol expansion, without a model loaded

1. Executed command	expand /CerebellarCortex/Golgis/1/Golgi_soma/spikegen/**
2. Part of expected output	no model loaded

3. Wildcard expansion, but without any match

Startup command : ./neurospacesparse -v 1 -q -R segments/purkinje_maind_passive.ndf

3.1. Is neurospaces startup successful ?

1. Part of expected output

./neurospacesparse: No errors for .+?/segments/purkinje_maind_passive.ndf.

3.2. Wait for the command prompt.

1. Part of expected output

neurospaces

3.3. A single symbol expansion, but symbol not found

1. Executed command	expand /CerebellarCortex/Golgis/1/Golgi_soma/spikegen/**
2. Part of expected output	neurospaces

4. Parameters with unresolved dependencies

Startup command : ./neurospacesparse -v 1 -q -R segments/purkinje_maind_passive.ndf

4.1. Is neurospaces startup successful ?

1. Part of expected output

./neurospacesparse: No errors for .+?/segments/purkinje_maind_passive.ndf.

4.2. What happens if we try to scale a parameter that does not have all the necessary dependencies ?

1. Executed command	printparameter /Purk_maind SURFACE
2. Part of expected output	= 1.79769e+308

5. Parameters with circular dependencies

Startup command : ./neurospacesparse -v 1 -q -R utilities/circle.ndf

5.1. Is neurospaces startup successful ?

1. Part of expected output

./neurospacesparse: No errors for .+?/utilities/circle.ndf

5.2. What happens if we try to resolve a parameter that has circular dependencies ?

1. Executed command

printparameter /segm RM

2. Part of expected output

ParameterResolveToPidinStack(): presumably unbound recursion for RM, this parameter value depends on other parameter values that depend back on this parameter value.
value = 1.79769e+308

5.3. What happens if we try to resolve a parameter that has circular dependencies ?

1. Executed command

printparameter /segm RM

2. Part of expected output

ParameterResolveToPidinStack(): presumably unbound recursion for RM, this parameter value depends on other parameter values that depend back on this parameter value.
value = 1.79769e+308

5.4. What happens if we try to resolve a parameter with a function with wrong parameters ?

1. Executed command	printparameter /segm RA
2. Part of expected output	value = 1.79769e+308

5.5. What happens if we try to resolve a parameter with a function parameter dependent on an unresolvable parameter ?

1. Executed command	printparameter /segm CM
2. Part of expected output	value = 1.79769e+308

5.6. What happens if we try to resolve a parameter that is dependent on a parameter with circular dependencies ?

1. Executed command

printparameter /segm A

2. Part of expected output

ParameterResolveToPidinStack(): presumably unbound recursion for B, this parameter value depends on other parameter values that depend back on this parameter value.
value = 1.79769e+308

5.7. What happens if we try to resolve a parameter that is dependent on a parameter with circular dependencies ?

1. Executed command

printparameter /segm B

2. Part of expected output

ParameterResolveToPidinStack(): presumably unbound recursion for A, this parameter value depends on other parameter values that depend back on this parameter value.
value = 1.79769e+308

6. A simple syntax error

Startup command : ./neurospacesparse -q -R utilities/syntaxerror.ndf

6.1. Has neurospaces reported the syntax error ?

1. Part of expected output

syntax error

7. Resolving the conductance of an isolated channel

Startup command : ./neurospacesparse -q -R channels/purkinje/cap.ndf

7.1. Has neurospaces reported that the conductance cannot be resolved ?

1. Executed command	printparameterscaled /cap G_MAX
2. Part of expected output	scaled value = 1.79769e+308

8. Resolving beta for an isolated pool

Startup command : ./neurospacesparse -q -R pools/purkinje_ca.ndf

8.1. Has neurospaces reported that beta cannot be resolved ?

1. Executed command	printparameterscaled /Ca_concen BETA
2. Part of expected output	scaled value = 1.79769e+308

9. Function parameters

Startup command : ./neurospacesparse -q -R legacy/cells/purk2m9s.ndf

9.1. Has neurospaces reported that we need two parameters for this command (1) ?

1. Executed command	printparameterinput
2. Part of expected output	please specify a context and two parameters on the command line

9.2. Has neurospaces reported that we need two parameters for this command (2) ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT
2. Part of expected output	please specify a context and two parameters on the command line

9.3. Has neurospaces reported that we need two parameters for this command (3) ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT Erev
2. Part of expected output	please specify a context and two parameters on the command line

9.4. Has neurospaces reported that we need two parameters for this command (4) ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT Erev Cin
2. Part of expected output	input not found

9.5. Has neurospaces reported that the symbol cannot be found ?

1. Executed command	printparameterinput /Purkinje/segments/CaT Erev concen
2. Part of expected output	symbol not found

9.6. Has neurospaces reported that the parameter cannot be found ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT a Erev
2. Part of expected output	input not found

9.7. Has neurospaces reported that the input cannot be found ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT Erev a
2. Part of expected output	input not found

9.8. Has neurospaces reported that the input cannot be found ?

1. Executed command	printparameterinput /Purkinje/segments/main[0]/CaT Erev concen
2. Part of expected output	input not found

10. Invalid queries over symbol table structure

Startup command : ./neurospacesparse -q segments/micron2.ndf

10.1. Can neurospaces handle an invalid query of the symbol table structure ?

1. Executed command	serialMapping /in12_1/mat_1/inserted_spine_0/neck /in12_1/mat_1/inserted_spine_0
2. Part of expected output	symbol is not an ancestor

11. Incomplete parameters for the inserter algorithm

Startup command : ./neurospacesparse -q -R utilities/incomplete_inserter.ndf

11.1. Is neurospaces startup not successful ?

1. Part of expected output

InserterInstance: \*\*\* Error: Inserter instance excitation cannot resolve NAME_SELECTOR parameter

\[.+?/utilities/incomplete_inserter.ndf line 38, near ALGORITHM\]

InserterInstance: \*\*\* Error: Inserter instance inhibition cannot resolve NAME_SELECTOR parameter

\[.+?/utilities/incomplete_inserter.ndf line 46, near ALGORITHM\]

InserterInstance: \*\*\* Error: Inserter instance spines cannot resolve NAME_SELECTOR parameter

\[.+?/utilities/incomplete_inserter.ndf line 54, near ALGORITHM\]

Inserter instance spines
Inserter instance inhibition
Inserter instance excitation
.+?/neurospacesparse: Parse of .*?utilities/incomplete_inserter.ndf failed with 3 \(cumulative\) errors.

12. Invalid parent segment parameter specifications

Startup command : ./neurospacesparse -q -R utilities/parents.ndf

12.1. Do we find invalid parent segment parameter specifications ?

1. Executed command

validatesegmentgroup /in12_1

2. Part of expected output

not found using SymbolLookupHierarchical() for /in12_1/mat_2: /mat_1
not found using PidinStackLookupTopSymbol() for /in12_1/mat_2: /mat_1
not found using SymbolLookupHierarchical() for /in12_1/mat_3: /in12_1/mat_3/mat_2
not found using PidinStackLookupTopSymbol() for /in12_1/mat_3: /in12_1/mat_3/mat_2

13. Error message when attempt to expand symbols without a selector

Startup command : ./neurospacesparse -q -R utilities/some_segments.ndf

13.1. Can we expand symbols without a selector ?

1. Executed command	expand /
2. Part of expected output	no symbols selector found