neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/coordinates

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coordinates

1. Transformations and conversions

2. EM contour coordinates

1. Transformations and conversions

Startup command : ./neurospacesparse -v 1 -q legacy/networks/network-test.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output

./neurospacesparse: No errors for .+?/legacy/networks/network-test.ndf.

1.2. What are the coordinates of the first Golgi cell ?

1. Executed command	printcoordinates n /CerebellarCortex /CerebellarCortex/Golgis/0
2. Part of expected output	transformed x = 0.00015 transformed y = 0.0001 transformed z = 5e-05 coordinate x = 0.00015 coordinate y = 0.0001 coordinate z = 5e-05

1.3. What are the coordinates of the second Golgi cell ?

1. Executed command	printcoordinates n /CerebellarCortex /CerebellarCortex/Golgis/1
2. Part of expected output	transformed x = 0.00045 transformed y = 0.0001 transformed z = 5e-05 coordinate x = 0.00045 coordinate y = 0.0001 coordinate z = 5e-05

1.4. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command

printcoordinates n /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[0]

2. Part of expected output

transformed x = 0.00169055
transformed y = 0.000155557
transformed z = 9.447e-06
coordinate x = 0.00169055
coordinate y = 0.000155557
coordinate z = 9.447e-06

1.5. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command

printcoordinates n /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[1]

2. Part of expected output

transformed x = 0.00168943
transformed y = 0.000163983
transformed z = 3.1356e-05
coordinate x = 0.00168943
coordinate y = 0.000163983
coordinate z = 3.1356e-05

1.6. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command

printcoordinates n /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[2]

2. Part of expected output

transformed x = 0.00168832
transformed y = 0.000165649
transformed z = 3.8022e-05
coordinate x = 0.00168832
coordinate y = 0.000165649
coordinate z = 3.8022e-05

1.7. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command

printcoordinates n /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[3]

2. Part of expected output

transformed x = 0.00168609
transformed y = 0.00016287
transformed z = 3.9689e-05
coordinate x = 0.00168609
coordinate y = 0.00016287
coordinate z = 3.9689e-05

1.8. Are rotations not applied when examining local coordinates of the first Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/0 /CerebellarCortex/Purkinjes/0/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

1.9. Are rotations not applied when examining local coordinates of the second Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/1 /CerebellarCortex/Purkinjes/1/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

1.10. Are rotations not applied when examining local coordinates of the third Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/2 /CerebellarCortex/Purkinjes/2/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

1.11. Are rotations not applied when examining local coordinates of the fourth Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/3 /CerebellarCortex/Purkinjes/3/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

1.12. Are rotations not applied when examining local coordinates of the fifth Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/4 /CerebellarCortex/Purkinjes/4/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

1.13. Are rotations not applied when examining local coordinates of the sixth Purkinje cell ?

1. Executed command

printcoordinates n /CerebellarCortex/Purkinjes/5 /CerebellarCortex/Purkinjes/5/segments/main[1]

2. Part of expected output

transformed x = 1.3983e-05
transformed y = 1.0571e-05
transformed z = 3.1356e-05
coordinate x = 1.3983e-05
coordinate y = 1.0571e-05
coordinate z = 3.1356e-05

2. EM contour coordinates

Startup command : ./neurospacesparse -q -R contours/section1.ndf

2.1. What are the coordinates of the first point of the first contour ?

1. Executed command	printcoordinates n /section1 /section1/e0/e0_0
2. Part of expected output	transformed x = 0 transformed y = 0 transformed z = 0 coordinate x = 0 coordinate y = 0 coordinate z = 0

2.2. What are the coordinates of the second point of the first contour ?

1. Executed command	printcoordinates n /section1 /section1/e0/e0_1
2. Part of expected output	transformed x = 1e-06 transformed y = 0 transformed z = 0 coordinate x = 1e-06 coordinate y = 0 coordinate z = 0

2.3. What are the coordinates of the third point of the first contour ?

1. Executed command	printcoordinates n /section1 /section1/e0/e0_2
2. Part of expected output	transformed x = 1e-06 transformed y = 1e-06 transformed z = 0 coordinate x = 1e-06 coordinate y = 1e-06 coordinate z = 0

2.4. What are the coordinates of the fourth point of the first contour ?

1. Executed command	printcoordinates n /section1 /section1/e0/e0_3
2. Part of expected output	transformed x = 0 transformed y = 1e-06 transformed z = 0 coordinate x = 0 coordinate y = 1e-06 coordinate z = 0

2.5. What are the coordinates of the first point of the second contour ?

1. Executed command	printcoordinates n /section1 /section1/e1/e1_0
2. Part of expected output	transformed x = 0 transformed y = 0 transformed z = 1e-08 coordinate x = 0 coordinate y = 0 coordinate z = 1e-08

2.6. What are the coordinates of the second point of the second contour ?

1. Executed command	printcoordinates n /section1 /section1/e1/e1_1
2. Part of expected output	transformed x = 1e-06 transformed y = 0 transformed z = 1e-08 coordinate x = 1e-06 coordinate y = 0 coordinate z = 1e-08

2.7. What are the coordinates of the third point of the second contour ?

1. Executed command	printcoordinates n /section1 /section1/e1/e1_2
2. Part of expected output	transformed x = 1e-06 transformed y = 1e-06 transformed z = 1e-08 coordinate x = 1e-06 coordinate y = 1e-06 coordinate z = 1e-08

2.8. What are the coordinates of the fourth point of the second contour ?

1. Executed command	printcoordinates n /section1 /section1/e1/e1_3
2. Part of expected output	transformed x = 0 transformed y = 1e-06 transformed z = 1e-08 coordinate x = 0 coordinate y = 1e-06 coordinate z = 1e-08