Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/coordinatecaching

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coordinate caching

1. Transformations and conversions
2. EM contour coordinates

1. Transformations and conversions

Startup command : ./neurospacesparse -v 1 -q legacy/networks/network-test.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output 
./neurospacesparse: No errors for .+?/legacy/networks/network-test.ndf.

1.2. What are the coordinates of the first Golgi cell ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Golgis/0
2. Part of expected output 
cached coordinate x = 0.00015
cached coordinate y = 0.0001
cached coordinate z = 5e-05
#coordinates : 439541

1.3. What are the coordinates of the second Golgi cell ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Golgis/1
2. Part of expected output 
cached coordinate x = 0.00045
cached coordinate y = 0.0001
cached coordinate z = 5e-05
#coordinates : 439541

1.4. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[0]
2. Part of expected output 
cached coordinate x = 0.00169055
cached coordinate y = 0.000155557
cached coordinate z = 9.447e-06
#coordinates : 439541

1.5. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[1]
2. Part of expected output 
cached coordinate x = 0.00168943
cached coordinate y = 0.000163983
cached coordinate z = 3.1356e-05
#coordinates : 439541

1.6. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[2]
2. Part of expected output 
cached coordinate x = 0.00168832
cached coordinate y = 0.000165649
cached coordinate z = 3.8022e-05
#coordinates : 439541

1.7. Have Purkinje cell relative coordinates been converted to absolute coordinates ?

1. Executed command
printcoordinates c /CerebellarCortex /CerebellarCortex/Purkinjes/0/segments/main[3]
2. Part of expected output 
cached coordinate x = 0.00168609
cached coordinate y = 0.00016287
cached coordinate z = 3.9689e-05
#coordinates : 439541

1.8. Are rotations not applied when examining local coordinates of the first Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/0 /CerebellarCortex/Purkinjes/0/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

1.9. Are rotations not applied when examining local coordinates of the second Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/1 /CerebellarCortex/Purkinjes/1/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

1.10. Are rotations not applied when examining local coordinates of the third Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/2 /CerebellarCortex/Purkinjes/2/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

1.11. Are rotations not applied when examining local coordinates of the fourth Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/3 /CerebellarCortex/Purkinjes/3/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

1.12. Are rotations not applied when examining local coordinates of the fifth Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/4 /CerebellarCortex/Purkinjes/4/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

1.13. Are rotations not applied when examining local coordinates of the sixth Purkinje cell ?

1. Executed command
printcoordinates c /CerebellarCortex/Purkinjes/5 /CerebellarCortex/Purkinjes/5/segments/main[1]
2. Part of expected output 
cached coordinate x = 1.3983e-05
cached coordinate y = 1.0571e-05
cached coordinate z = 3.1356e-05
#coordinates : 25525

2. EM contour coordinates

Startup command : ./neurospacesparse -q -R contours/section1.ndf

2.1. What are the coordinates of the first point of the first contour ?

1. Executed command
printcoordinates c /section1 /section1/e0/e0_0
2. Part of expected output 
cached coordinate x = 0
cached coordinate y = 0
cached coordinate z = 0
#coordinates : 10

2.2. What are the coordinates of the second point of the first contour ?

1. Executed command
printcoordinates c /section1 /section1/e0/e0_1
2. Part of expected output 
cached coordinate x = 1e-06
cached coordinate y = 0
cached coordinate z = 0
#coordinates : 10

2.3. What are the coordinates of the third point of the first contour ?

1. Executed command
printcoordinates c /section1 /section1/e0/e0_2
2. Part of expected output 
cached coordinate x = 1e-06
cached coordinate y = 1e-06
cached coordinate z = 0
#coordinates : 10

2.4. What are the coordinates of the fourth point of the first contour ?

1. Executed command
printcoordinates c /section1 /section1/e0/e0_3
2. Part of expected output 
cached coordinate x = 0
cached coordinate y = 1e-06
cached coordinate z = 0
#coordinates : 10

2.5. What are the coordinates of the first point of the second contour ?

1. Executed command
printcoordinates c /section1 /section1/e1/e1_0
2. Part of expected output 
cached coordinate x = 0
cached coordinate y = 0
cached coordinate z = 1e-08
#coordinates : 10

2.6. What are the coordinates of the second point of the second contour ?

1. Executed command
printcoordinates c /section1 /section1/e1/e1_1
2. Part of expected output 
cached coordinate x = 1e-06
cached coordinate y = 0
cached coordinate z = 1e-08
#coordinates : 10

2.7. What are the coordinates of the third point of the second contour ?

1. Executed command
printcoordinates c /section1 /section1/e1/e1_2
2. Part of expected output 
cached coordinate x = 1e-06
cached coordinate y = 1e-06
cached coordinate z = 1e-08
#coordinates : 10

2.8. What are the coordinates of the fourth point of the second contour ?

1. Executed command
printcoordinates c /section1 /section1/e1/e1_3
2. Part of expected output 
cached coordinate x = 0
cached coordinate y = 1e-06
cached coordinate z = 1e-08
#coordinates : 10