Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/connections

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connections and solvers

1. Spiker4 test network model - connections index
2. Network model - connections and solver registrations
3. Simplified input layer with simple connections

1. Spiker4 test network model - connections index

Startup command : ./neurospacesparse -v 1 -q tests/networks/spiker4.ndf

1.1. Is neurospaces startup successful ?

1. Part of expected output 
./neurospacesparse: No errors for .+?/tests/networks/spiker4.ndf.

1.2. Can we define an index over all projections ?

1. Executed command
pqsetall c
2. Part of expected output 
connections = 4

1.3. Can we traverse the connections of the first source cell?

1. Executed command
pqtraverse c /spiker4/source1/soma/spikegen
2. Part of expected output 
Connection (00000)
        CCONN  pre(15.000000) -> post(34.000000)
        CCONN  Delay, Weight (0.001000,1.000000)

Connection (00001)
        CCONN  pre(15.000000) -> post(39.000000)
        CCONN  Delay, Weight (0.002000,2.000000)

1.4. Can we traverse the connections of the second source cell?

1. Executed command
pqtraverse c /spiker4/source2/soma/spikegen
2. Part of expected output 
Connection (00000)
        CCONN  pre(29.000000) -> post(34.000000)
        CCONN  Delay, Weight (0.003000,3.000000)

Connection (00001)
        CCONN  pre(29.000000) -> post(39.000000)
        CCONN  Delay, Weight (0.004000,4.000000)

1.5. Does the first target serial correspond with the second target cell?

1. Executed command
serial2context / 34
2. Part of expected output 
serial id /,34 -> /spiker4/target1/soma/s/synapse

1.6. Does the first target serial correspond with the second target cell?

1. Executed command
serial2context / 39
2. Part of expected output 
serial id /,39 -> /spiker4/target2/soma/s/synapse

1.7. Can we traverse the connections of the first target cell?

1. Executed command
pqtraverse c /spiker4/target1/soma/s/synapse
2. Part of expected output 
Connection (00000)
        CCONN  pre(15.000000) -> post(34.000000)
        CCONN  Delay, Weight (0.001000,1.000000)

Connection (00001)
        CCONN  pre(29.000000) -> post(34.000000)
        CCONN  Delay, Weight (0.003000,3.000000)

1.8. Can we traverse the connections of the second target cell?

1. Executed command
pqtraverse c /spiker4/target2/soma/s/synapse
2. Part of expected output 
Connection (00000)
        CCONN  pre(15.000000) -> post(39.000000)
        CCONN  Delay, Weight (0.002000,2.000000)

Connection (00001)
        CCONN  pre(29.000000) -> post(39.000000)
        CCONN  Delay, Weight (0.004000,4.000000)

1.9. Does the first source serial correspond with the first source cell?

1. Executed command
serial2context / 15
2. Part of expected output 
serial id /,15 -> /spiker4/source1/soma/spikegen

1.10. Does the second source serial correspond with the second source cell?

1. Executed command
serial2context / 29
2. Part of expected output 
serial id /,29 -> /spiker4/source2/soma/spikegen

2. Network model - connections and solver registrations

Startup command : ./neurospacesparse -v 1 -q legacy/networks/network-test.ndf

2.1. Is neurospaces startup successful ?

1. Part of expected output 
./neurospacesparse: No errors for .+?/legacy/networks/network-test.ndf.

2.2. What is the number of connections on the AMPA channel of the first Golgi cell ?

1. Executed command
spikereceivercount /CerebellarCortex/ForwardProjection /CerebellarCortex/Golgis/0/Golgi_soma/pf_AMPA/synapse
2. Part of expected output 
Number of connections : 4452

2.3. What is the number of connections on the domain translator of the second granule cell ?

1. Executed command
spikesendercount /CerebellarCortex/ForwardProjection /CerebellarCortex/Granules/1/Granule_soma/spikegen
2. Part of expected output 
Number of connections : 8

2.4. Do we have already solver registrations ?

1. Executed command
solverregistrations
2. Part of expected output 







2.5. How many connections has the first granule cell's GABAA channel in the feedback projection ?





1. Executed command
projectionquerycount c /CerebellarCortex/Granules/0/Granule_soma/GABAA/synapse /CerebellarCortex/BackwardProjection/GABAA




2. Part of expected output 
#connections = 1








2.6. How many connections has the first granule cell's GABAB channel in the feedback projection ?





1. Executed command
projectionquerycount c /CerebellarCortex/Granules/0/Granule_soma/GABAB/synapse /CerebellarCortex/BackwardProjection/GABAB




2. Part of expected output 
#connections = 1








2.7. How many compartments do the granule cells have in total ?





1. Executed command
segmentcount /CerebellarCortex/Granules




2. Part of expected output 
Number of segments : 6240








2.8. What is the solver for the granule population ?





1. Executed command
solverinfo /CerebellarCortex/Granules




2. Part of expected output 







2.9. What is the treespaces ID of a synaptic channel on a spine of the first Purkinje cell ?





1. Executed command
serialID /CerebellarCortex/Purkinjes/0 /CerebellarCortex/Purkinjes/0/segments/b0s01[1]/Purkinje_spine_0/head/par




2. Part of expected output 
serial ID = 1141








2.10. What is the treespaces ID of a synaptic channel on a spine of the second Purkinje cell ?





1. Executed command
serialID /CerebellarCortex/Purkinjes/1 /CerebellarCortex/Purkinjes/1/segments/b3s46[15]/Purkinje_spine_0/head/par




2. Part of expected output 
serial ID = 25523








2.11. What is the treespaces ID of the feedforward projection if we accidently make a typo ?





1. Executed command
serialID /CerebellarCortex/ForwardProjection /CerebellarCortex




2. Part of expected output 
Get neurospaces C implementation prior to -r 405 to see what happens here.
	That version has connections with hardcoded serial IDs per connection.








2.12. What is the treespaces ID of the feedforward projection ?





1. Executed command
serialID /CerebellarCortex /CerebellarCortex/ForwardProjection




2. Part of expected output 
serial ID = 328942








2.13. How does neurospaces react if we try to access parameters that are not defined ?





1. Executed command
printparameter /CerebellarCortex/Golgis/0/Golgi_soma/KDr Emax




2. Part of expected output 
parameter not found in symbol








2.14. What is the number of connections in the feedforward projection





1. Executed command
connectioncount /CerebellarCortex/ForwardProjection




2. Part of expected output 
Number of connections : 98112








2.15. Can we assign a solver to the granule population ?





1. Executed command
solverset /CerebellarCortex/Granules /Granules




2. Part of expected output 







2.16. Can we assign a solver to the Golgi population ?





1. Executed command
solverset /CerebellarCortex/Golgis /Golgis




2. Part of expected output 







2.17. Can we assign a solver to the first Purkinje cell ?





1. Executed command
solverset /CerebellarCortex/Purkinjes/0 /Purkinje[0]




2. Part of expected output 







2.18. Can we assign a solver to the second Purkinje cell ?





1. Executed command
solverset /CerebellarCortex/Purkinjes/1 /Purkinje[1]




2. Part of expected output 







2.19. Have the solvers been registered right ?





1. Executed command
solverregistrations




2. Part of expected output 

  - name: /Granules
    solver: not registered
    context: /CerebellarCortex/Granules/**
  - name: /Golgis
    solver: not registered
    context: /CerebellarCortex/Golgis/**
  - name: /Purkinje[0]
    solver: not registered
    context: /CerebellarCortex/Purkinjes/0/**
  - name: /Purkinje[1]
    solver: not registered
    context: /CerebellarCortex/Purkinjes/1/**








2.20. Can the solver for a synaptic channel of the first Purkinje cell be found, is it the one we just assigned to it ?





1. Executed command
resolvesolver /CerebellarCortex/Purkinjes/0/segments/b0s01[1]/Purkinje_spine_0/head/par




2. Part of expected output 
Solver = /Purkinje[0], solver serial ID = 1141
Solver serial context for 1141 = 
	/CerebellarCortex/Purkinjes/0/segments/b0s01[1]/Purkinje_spine_0/head/par








2.21. What are the connections in the feedforward and feedback projections for the first Golgi cell's soma ?





1. Executed command
projectionquery c /CerebellarCortex/Golgis/0/Golgi_soma/spikegen /CerebellarCortex/ForwardProjection /CerebellarCortex/BackwardProjection/GABAA /CerebellarCortex/BackwardProjection/GABAB




2. Part of expected output 
Connection (00000)
        CCONN  pre(137391.000000) -> post(122.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00001)
        CCONN  pre(137391.000000) -> post(144.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00002)
        CCONN  pre(137391.000000) -> post(166.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00003)
        CCONN  pre(137391.000000) -> post(188.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00004)
        CCONN  pre(137391.000000) -> post(210.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00005)
        CCONN  pre(137391.000000) -> post(232.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00006)
        CCONN  pre(137391.000000) -> post(254.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00007)
        CCONN  pre(137391.000000) -> post(276.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00008)
        CCONN  pre(137391.000000) -> post(298.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00009)
        CCONN  pre(137391.000000) -> post(320.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00010)
        CCONN  pre(137391.000000) -> post(342.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00011)
        CCONN  pre(137391.000000) -> post(364.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00012)
        CCONN  pre(137391.000000) -> post(2762.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00013)
        CCONN  pre(137391.000000) -> post(2784.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00014)
        CCONN  pre(137391.000000) -> post(2806.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00015)
        CCONN  pre(137391.000000) -> post(2828.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00016)
        CCONN  pre(137391.000000) -> post(2850.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00017)
        CCONN  pre(137391.000000) -> post(2872.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00018)
        CCONN  pre(137391.000000) -> post(2894.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00019)
        CCONN  pre(137391.000000) -> post(2916.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00020)
        CCONN  pre(137391.000000) -> post(2938.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00021)
        CCONN  pre(137391.000000) -> post(2960.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00022)
        CCONN  pre(137391.000000) -> post(2982.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00023)
        CCONN  pre(137391.000000) -> post(3004.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00024)
        CCONN  pre(137391.000000) -> post(5402.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00025)
        CCONN  pre(137391.000000) -> post(5424.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00026)
        CCONN  pre(137391.000000) -> post(5446.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00027)
        CCONN  pre(137391.000000) -> post(5468.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00028)
        CCONN  pre(137391.000000) -> post(5490.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00029)
        CCONN  pre(137391.000000) -> post(5512.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00030)
        CCONN  pre(137391.000000) -> post(5534.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00031)
        CCONN  pre(137391.000000) -> post(5556.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00032)
        CCONN  pre(137391.000000) -> post(5578.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00033)
        CCONN  pre(137391.000000) -> post(5600.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00034)
        CCONN  pre(137391.000000) -> post(5622.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00035)
        CCONN  pre(137391.000000) -> post(5644.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00036)
        CCONN  pre(137391.000000) -> post(8042.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00037)
        CCONN  pre(137391.000000) -> post(8064.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00038)
        CCONN  pre(137391.000000) -> post(8086.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00039)
        CCONN  pre(137391.000000) -> post(8108.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00040)
        CCONN  pre(137391.000000) -> post(8130.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00041)
        CCONN  pre(137391.000000) -> post(8152.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00042)
        CCONN  pre(137391.000000) -> post(8174.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00043)
        CCONN  pre(137391.000000) -> post(8196.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00044)
        CCONN  pre(137391.000000) -> post(8218.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00045)
        CCONN  pre(137391.000000) -> post(8240.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00046)
        CCONN  pre(137391.000000) -> post(8262.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00047)
        CCONN  pre(137391.000000) -> post(8284.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00048)
        CCONN  pre(137391.000000) -> post(10682.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00049)
        CCONN  pre(137391.000000) -> post(10704.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00050)
        CCONN  pre(137391.000000) -> post(10726.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00051)
        CCONN  pre(137391.000000) -> post(10748.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00052)
        CCONN  pre(137391.000000) -> post(10770.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00053)
        CCONN  pre(137391.000000) -> post(10792.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00054)
        CCONN  pre(137391.000000) -> post(10814.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00055)
        CCONN  pre(137391.000000) -> post(10836.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00056)
        CCONN  pre(137391.000000) -> post(10858.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00057)
        CCONN  pre(137391.000000) -> post(10880.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00058)
        CCONN  pre(137391.000000) -> post(10902.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00059)
        CCONN  pre(137391.000000) -> post(10924.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00060)
        CCONN  pre(137391.000000) -> post(13322.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00061)
        CCONN  pre(137391.000000) -> post(13344.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00062)
        CCONN  pre(137391.000000) -> post(13366.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00063)
        CCONN  pre(137391.000000) -> post(13388.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00064)
        CCONN  pre(137391.000000) -> post(13410.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00065)
        CCONN  pre(137391.000000) -> post(13432.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00066)
        CCONN  pre(137391.000000) -> post(13454.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00067)
        CCONN  pre(137391.000000) -> post(13476.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00068)
        CCONN  pre(137391.000000) -> post(13498.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00069)
        CCONN  pre(137391.000000) -> post(13520.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00070)
        CCONN  pre(137391.000000) -> post(13542.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00071)
        CCONN  pre(137391.000000) -> post(13564.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00072)
        CCONN  pre(137391.000000) -> post(15962.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00073)
        CCONN  pre(137391.000000) -> post(15984.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00074)
        CCONN  pre(137391.000000) -> post(16006.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00075)
        CCONN  pre(137391.000000) -> post(16028.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00076)
        CCONN  pre(137391.000000) -> post(16050.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00077)
        CCONN  pre(137391.000000) -> post(16072.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00078)
        CCONN  pre(137391.000000) -> post(16094.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00079)
        CCONN  pre(137391.000000) -> post(16116.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00080)
        CCONN  pre(137391.000000) -> post(16138.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00081)
        CCONN  pre(137391.000000) -> post(16160.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00082)
        CCONN  pre(137391.000000) -> post(16182.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00083)
        CCONN  pre(137391.000000) -> post(16204.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00084)
        CCONN  pre(137391.000000) -> post(18602.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00085)
        CCONN  pre(137391.000000) -> post(18624.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00086)
        CCONN  pre(137391.000000) -> post(18646.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00087)
        CCONN  pre(137391.000000) -> post(18668.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00088)
        CCONN  pre(137391.000000) -> post(18690.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00089)
        CCONN  pre(137391.000000) -> post(18712.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00090)
        CCONN  pre(137391.000000) -> post(18734.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00091)
        CCONN  pre(137391.000000) -> post(18756.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00092)
        CCONN  pre(137391.000000) -> post(18778.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00093)
        CCONN  pre(137391.000000) -> post(18800.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00094)
        CCONN  pre(137391.000000) -> post(18822.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00095)
        CCONN  pre(137391.000000) -> post(18844.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00096)
        CCONN  pre(137391.000000) -> post(21242.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00097)
        CCONN  pre(137391.000000) -> post(21264.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00098)
        CCONN  pre(137391.000000) -> post(21286.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00099)
        CCONN  pre(137391.000000) -> post(21308.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00100)
        CCONN  pre(137391.000000) -> post(21330.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00101)
        CCONN  pre(137391.000000) -> post(21352.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00102)
        CCONN  pre(137391.000000) -> post(21374.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00103)
        CCONN  pre(137391.000000) -> post(21396.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00104)
        CCONN  pre(137391.000000) -> post(21418.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00105)
        CCONN  pre(137391.000000) -> post(21440.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00106)
        CCONN  pre(137391.000000) -> post(21462.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00107)
        CCONN  pre(137391.000000) -> post(21484.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00108)
        CCONN  pre(137391.000000) -> post(23882.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00109)
        CCONN  pre(137391.000000) -> post(23904.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00110)
        CCONN  pre(137391.000000) -> post(23926.000000)
        CCONN  Delay, Weight (0.000000,45.000000)

Connection (00111)
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Connection (00118)
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Connection (00121)
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Connection (00122)
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Connection (00123)
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Connection (00124)
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Connection (00125)
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Connection (00126)
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Connection (00127)
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Connection (00128)
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Connection (00129)
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Connection (00130)
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Connection (00131)
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Connection (00132)
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Connection (00133)
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Connection (00134)
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Connection (00137)
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Connection (00138)
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Connection (00139)
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Connection (00140)
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Connection (00141)
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Connection (00142)
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Connection (00143)
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Connection (00144)
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Connection (00145)
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Connection (00146)
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Connection (00147)
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Connection (00148)
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Connection (00149)
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Connection (00150)
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Connection (00151)
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Connection (00152)
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Connection (00153)
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Connection (00154)
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Connection (00155)
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Connection (00156)
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Connection (00157)
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Connection (00158)
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Connection (00159)
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Connection (00160)
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Connection (00161)
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Connection (00162)
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Connection (00163)
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Connection (00164)
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Connection (00165)
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Connection (00166)
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Connection (00167)
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Connection (00168)
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Connection (00169)
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Connection (00170)
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Connection (00171)
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Connection (00172)
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Connection (00173)
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Connection (00174)
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Connection (00175)
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Connection (00176)
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Connection (00177)
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Connection (00178)
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Connection (00179)
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Connection (00180)
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Connection (00181)
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Connection (00182)
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Connection (00183)
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Connection (00184)
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Connection (00185)
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Connection (00186)
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Connection (00187)
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Connection (00189)
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Connection (00190)
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Connection (00191)
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Connection (00192)
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Connection (00193)
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Connection (00194)
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Connection (00195)
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Connection (00196)
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Connection (00197)
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Connection (00198)
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Connection (00199)
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Connection (00200)
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Connection (00201)
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Connection (00202)
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Connection (00203)
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Connection (00204)
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Connection (00205)
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Connection (00206)
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Connection (00207)
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Connection (00208)
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Connection (00209)
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Connection (00210)
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Connection (00211)
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Connection (00212)
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Connection (00213)
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Connection (00214)
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Connection (00215)
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Connection (00216)
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Connection (00217)
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Connection (00218)
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Connection (00219)
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Connection (00220)
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Connection (00221)
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Connection (00222)
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Connection (00223)
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Connection (00224)
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Connection (00225)
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Connection (00226)
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Connection (00227)
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Connection (00228)
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Connection (00229)
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Connection (00230)
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Connection (00231)
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Connection (00232)
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Connection (00233)
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Connection (00234)
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Connection (00235)
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Connection (00236)
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Connection (00237)
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Connection (00238)
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Connection (00239)
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Connection (00240)
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Connection (00241)
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Connection (00242)
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Connection (00243)
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Connection (00244)
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Connection (00245)
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Connection (00246)
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Connection (00247)
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Connection (00248)
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Connection (00249)
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Connection (00250)
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Connection (00251)
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Connection (00252)
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Connection (00253)
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Connection (00254)
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Connection (00255)
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Connection (00256)
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Connection (00257)
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Connection (00258)
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Connection (00259)
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Connection (00260)
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Connection (00261)
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Connection (00262)
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Connection (00263)
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Connection (00264)
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Connection (00265)
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Connection (00266)
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Connection (00271)
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Connection (00274)
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Connection (00275)
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Connection (00276)
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Connection (00277)
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Connection (00278)
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Connection (00279)
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Connection (00497)
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Connection (00500)
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Connection (00501)
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Connection (00502)
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Connection (00507)
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Connection (00516)
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Connection (00517)
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Connection (00518)
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Connection (00519)
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Connection (00520)
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Connection (00521)
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Connection (00522)
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Connection (00523)
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Connection (00524)
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Connection (00526)
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Connection (00529)
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Connection (00530)
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Connection (00531)
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Connection (00532)
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Connection (00533)
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Connection (00534)
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Connection (00545)
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Connection (00546)
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Connection (00549)
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Connection (00550)
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Connection (00552)
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Connection (00553)
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Connection (00554)
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Connection (00555)
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Connection (00556)
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Connection (00557)
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Connection (00561)
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Connection (00562)
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Connection (00564)
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Connection (00565)
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Connection (00566)
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Connection (00567)
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Connection (00568)
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Connection (00569)
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Connection (00570)
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Connection (00571)
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Connection (00572)
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Connection (00573)
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Connection (00574)
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Connection (00575)
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Connection (00576)
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Connection (00577)
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Connection (00578)
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Connection (00579)
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Connection (00580)
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Connection (00581)
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Connection (00582)
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Connection (00583)
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Connection (00584)
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Connection (00585)
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Connection (00586)
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Connection (00587)
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Connection (00588)
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Connection (00589)
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Connection (00590)
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Connection (00591)
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Connection (00592)
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Connection (00593)
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Connection (00595)
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Connection (00596)
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Connection (00597)
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Connection (00598)
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Connection (00599)
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Connection (00600)
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Connection (00601)
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Connection (00602)
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Connection (00603)
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Connection (00604)
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Connection (00605)
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Connection (00606)
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Connection (00610)
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Connection (00611)
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Connection (00613)
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Connection (00615)
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Connection (00616)
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Connection (00617)
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Connection (00618)
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Connection (00619)
        CCONN  pre(137391.000000) -> post(100599.000000)
        CCONN  Delay, Weight (0.000000,9.000000)

Connection (00620)
        CCONN  pre(137391.000000) -> post(100621.000000)
        CCONN  Delay, Weight (0.000000,9.000000)

Connection (00621)
        CCONN  pre(137391.000000) -> post(100643.000000)
        CCONN  Delay, Weight (0.000000,9.000000)

Connection (00622)
        CCONN  pre(137391.000000) -> post(100665.000000)
        CCONN  Delay, Weight (0.000000,9.000000)

Connection (00623)
        CCONN  pre(137391.000000) -> post(100687.000000)
        CCONN  Delay, Weight (0.000000,9.000000)









2.22. How many connections in the feedforward and feedback projections can be found for the first Golgi cell's soma ?





1. Executed command
projectionquerycount c /CerebellarCortex/Golgis/0/Golgi_soma/spikegen /CerebellarCortex/ForwardProjection /CerebellarCortex/BackwardProjection/GABAA /CerebellarCortex/BackwardProjection/GABAB




2. Part of expected output 
#connections = 624








2.23. How many connections in the feedforward and feedback projections can be found ?





1. Executed command
projectionquerycount c /CerebellarCortex/ForwardProjection /CerebellarCortex/BackwardProjection/GABAA /CerebellarCortex/BackwardProjection/GABAB




2. Part of expected output 
first symbol is not attachment, will be used as part of projectionquery
#connections = 110592








2.24. What are the forestspace IDs for the spine neck ?





1. Executed command
serialMapping /CerebellarCortex/Purkinjes /CerebellarCortex/Purkinjes/0/segments/b0s01[1]/Purkinje_spine_0/neck




2. Part of expected output 
Traversal serial ID = 1141
Principal serial ID = 1141 of 153157 Principal successors








2.25. Can the mossy fiber forestspace IDs be found ?





1. Executed command
serial2context /CerebellarCortex 22




2. Part of expected output 
serial id /CerebellarCortex,22 -> /CerebellarCortex/MossyFibers/3/value








2.26. Can we define a caching projection query for the feedforward, feedback and mossy fiber projections ?





1. Executed command
pqset c /CerebellarCortex/ForwardProjection /CerebellarCortex/BackwardProjection/GABAA /CerebellarCortex/BackwardProjection/GABAB /CerebellarCortex/MossyFiberProjection/GranuleComponent/NMDA /CerebellarCortex/MossyFiberProjection/GranuleComponent/AMPA /CerebellarCortex/MossyFiberProjection/GolgiComponent




2. Part of expected output 
caching = yes








2.27. What is the number of connections in the defined projectionquery, caching mode ?





1. Executed command
pqcount c




2. Part of expected output 
#connections = 148660








2.28. What is the number of connections in the defined projectionquery, non-caching mode ?





1. Executed command
pqcount n




2. Part of expected output 
#connections = 148660








2.29. What is the number of pre-synaptic elements in the defined projectionquery ?





1. Executed command
pqcountpre




2. Part of expected output 
number of pre-synaptic serials: 6290





3. Comment
The number of Golgi and granule cells plus the number of mossy fibers







2.30. What is the number of connections in the defined projectionquery for the first Golgi cell's domain mapper, caching mode ?





1. Executed command
pqcount c /CerebellarCortex/Golgis/0/Golgi_soma/spikegen




2. Part of expected output 
#connections = 624








2.31. What is the number of connections in the defined projectionquery for the first Golgi cell's domain mapper, non-caching mode ?





1. Executed command
pqcount n /CerebellarCortex/Golgis/0/Golgi_soma/spikegen




2. Part of expected output 
#connections = 624








2.32. What is the number of connections in the defined projectionquery for the first Golgi cell's parallel fiber synapse, caching mode ?





1. Executed command
pqcount c /CerebellarCortex/Golgis/0/Golgi_soma/pf_AMPA/synapse




2. Part of expected output 
#connections = 4452








2.33. What is the number of connections in the defined projectionquery for the first Golgi cell's parallel fiber synapse, non-caching mode ?





1. Executed command
pqcount n /CerebellarCortex/Golgis/0/Golgi_soma/pf_AMPA/synapse




2. Part of expected output 
#connections = 4452








3. Simplified input layer with simple connections
This command definition is currently disabled (disabled is 'individual connections are broken for the moment')
Startup command : ./neurospacesparse -v 1 -q networks/input.ndf
3.1. Is neurospaces startup successful ?





1. Part of expected output 
./neurospacesparse: No errors for .+?/networks/input.ndf.




2. This test is currently not executed
(disabled is 'individual connections are broken for the moment')







3.2. Can we define a projection query for flexible connections ?





1. Executed command
pqset c /TestOfInputFibers/MossyFiberInputProjection




2. Part of expected output 
caching = yes





3. This test is currently not executed
(disabled is 'individual connections are broken for the moment')







3.3. Can we find connections for the first mossy fiber, caching mode ?





1. Executed command
pqcount c /TestOfInputFibers/MossyFibers/Fiber[0]/spikegen




2. Part of expected output 
connections = 1





3. This test is currently not executed
(disabled is 'individual connections are broken for the moment')







3.4. Can we find connections for the first mossy fiber, non-caching mode ?





1. Executed command
pqcount n /TestOfInputFibers/MossyFibers/Fiber[0]/spikegen




2. Part of expected output 
connections = 1





3. This test is currently not executed
(disabled is 'individual connections are broken for the moment')