Index of group ./specifications/active/singles

active single compartment testing

1. Single compartment with a naf conductance.
Startup command : tests/code/singlea-naf

(No model has been loaded for the following set of commands.)
1.1. Is a single compartment with a naf conductance solved correctly ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.00784064
00004 :: CONCEPTGATE 1 1 (nil)							 0.263978
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (6e-06)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.0283939
00004 :: CONCEPTGATE 1 1 (nil)							 0.261869
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028007)
-------
Iteration 100
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.000606)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.99999
00004 :: CONCEPTGATE 1 1 (nil)							 1.89705e-08
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.041295)
-------
Iteration 200
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.001206)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999982
00004 :: CONCEPTGATE 1 1 (nil)							 3.71756e-08
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.036938)
-------
Iteration 300
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.001806)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999965
00004 :: CONCEPTGATE 1 1 (nil)							 7.11156e-08
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0327386)
-------
Iteration 400
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.002406)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999936
00004 :: CONCEPTGATE 1 1 (nil)							 1.32741e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0286925)
-------
Iteration 500
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.003006)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999886
00004 :: CONCEPTGATE 1 1 (nil)							 2.42045e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0247969)
-------
Iteration 600
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.003606)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.9998
00004 :: CONCEPTGATE 1 1 (nil)							 4.30582e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0210519)
-------
Iteration 700
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.004206)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999657
00004 :: CONCEPTGATE 1 1 (nil)							 7.47084e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.017462)
-------
Iteration 800
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.004806)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999429
00004 :: CONCEPTGATE 1 1 (nil)							 1.26238e-06
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0140391)
-------
Iteration 900
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.005406)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.999073
00004 :: CONCEPTGATE 1 1 (nil)							 2.07404e-06
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.0108056)
-------
Final Iteration
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.006)
Heccer (dStep) : (6e-06)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 65568.5 1.00018
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.998556
00004 :: CONCEPTGATE 1 1 (nil)							 3.27552e-06
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00018)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (0.00782755)