neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/tabulator

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tabulation

1. Tabulation of channel kinetics

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

1.1. Is startup successful ?

1. Expected output

Welcome to the GENESIS 3 shell

1.2. Can we load the standard purkinje cell model ?

1. Executed command	ndf_load cells/purkinje/edsjb1994.ndf
2. Expected output

1.3. Can we get access to the fast sodium activation tables ?

1. Executed command

tabulate /Purkinje segments/soma/naf/naf_gate_activation

2. Expected output


tau:
  - 2.48232346483403e-05
  - 2.81275776716263e-05
  - 3.18713490451171e-05
  - 3.61127079259058e-05
  - 4.0917330384233e-05
  - 4.63592633538075e-05
  - 5.25217973580191e-05
  - 5.94982994625541e-05
  - 6.73929012450935e-05
  - 7.63208595158889e-05
  - 8.64082817513529e-05
  - 9.7790705639851e-05
  - 0.000110609701497741
  - 0.000125006171144694
  - 0.000141108280569085
  - 0.000159010935546264
  - 0.000178742431396589
  - 0.00020021270215034
  - 0.000223137444601811
  - 0.000246935570820242
  - 0.000270608110012524
  - 0.000292630197046223
  - 0.000310925603980611
  - 0.000323029930144538
  - 0.000326536796686297
  - 0.000319797944521443
  - 0.000302621441845721
  - 0.000276559619565248
  - 0.000244535095691783
  - 0.000209975621454169
  - 0.000175929907117437
  - 0.000144547965871574
  - 0.000116995323612242
  - 9.36437496252317e-05
  - 7.43473671127536e-05
  - 5.86857640794439e-05
  - 4.61338280788993e-05
  - 3.61625196493734e-05
  - 2.82897359676902e-05
  - 2.21002054559031e-05
  - 1.72483191033427e-05
  - 1.34526986966598e-05
  - 1.04875399672917e-05
  - 8.17337044817344e-06
  - 6.36846370671902e-06
  - 4.96139109882323e-06
  - 3.86480639873541e-06
  - 3.01038070722099e-06
  - 2.34473659411036e-06
  - 1.82621639686851e-06
  - 1.42233033391826e-06
  - 1.10775029188525e-06
  - 8.62737303994357e-07
  - 6.7191146617396e-07
  - 5.23291052400421e-07
  - 4.07542626847936e-07
  - 3.17396200591752e-07
  - 2.47189310775136e-07
  - 1.92511711184685e-07
  - 1.49928529624829e-07

1.4. Can we get access to the fast sodium inactivation tables ?

1. Executed command	tabulate /Purkinje segments/soma/naf/naf_gate_inactivation
2. Expected output	tau: - 2.48232346483403e-05 - 2.81275776716263e-05 - 3.18713490451171e-05 - 3.61127079259058e-05 - 4.0917330384233e-05 - 4.63592633538075e-05 - 5.25217973580191e-05 - 5.94982994625541e-05 - 6.73929012450935e-05 - 7.63208595158889e-05 - 8.64082817513529e-05 - 9.7790705639851e-05 - 0.000110609701497741 - 0.000125006171144694 - 0.000141108280569085 - 0.000159010935546264 - 0.000178742431396589 - 0.00020021270215034 - 0.000223137444601811 - 0.000246935570820242 - 0.000270608110012524 - 0.000292630197046223 - 0.000310925603980611 - 0.000323029930144538 - 0.000326536796686297 - 0.000319797944521443 - 0.000302621441845721 - 0.000276559619565248 - 0.000244535095691783 - 0.000209975621454169 - 0.000175929907117437 - 0.000144547965871574 - 0.000116995323612242 - 9.36437496252317e-05 - 7.43473671127536e-05 - 5.86857640794439e-05 - 4.61338280788993e-05 - 3.61625196493734e-05 - 2.82897359676902e-05 - 2.21002054559031e-05 - 1.72483191033427e-05 - 1.34526986966598e-05 - 1.04875399672917e-05 - 8.17337044817344e-06 - 6.36846370671902e-06 - 4.96139109882323e-06 - 3.86480639873541e-06 - 3.01038070722099e-06 - 2.34473659411036e-06 - 1.82621639686851e-06 - 1.42233033391826e-06 - 1.10775029188525e-06 - 8.62737303994357e-07 - 6.7191146617396e-07 - 5.23291052400421e-07 - 4.07542626847936e-07 - 3.17396200591752e-07 - 2.47189310775136e-07 - 1.92511711184685e-07 - This is wrong
3. Comment	This test fails due to producing the output for the naf_activation gate instead of the inactivation gate. There is currently an error in Heccers addressing.c implementation for looking up tables.
4. This test is currently not executed	(disabled is 'Check the comment for the naf_inactivation test.')

1.5. Can we get access to the calcium activation tables ?

1. Executed command	tabulate /Purkinje segments/soma/cat/cat_gate_activation
2. Expected output	tau: - 2.48232346483403e-05 - 2.81275776716263e-05 - 3.18713490451171e-05 - 3.61127079259058e-05 - 4.0917330384233e-05 - 4.63592633538075e-05 - 5.25217973580191e-05 - 5.94982994625541e-05 - 6.73929012450935e-05 - 7.63208595158889e-05 - 8.64082817513529e-05 - 9.7790705639851e-05 - 0.000110609701497741 - 0.000125006171144694 - 0.000141108280569085 - 0.000159010935546264 - 0.000178742431396589 - 0.00020021270215034 - 0.000223137444601811 - 0.000246935570820242 - 0.000270608110012524 - 0.000292630197046223 - 0.000310925603980611 - 0.000323029930144538 - 0.000326536796686297 - 0.000319797944521443 - 0.000302621441845721 - 0.000276559619565248 - 0.000244535095691783 - 0.000209975621454169 - 0.000175929907117437 - 0.000144547965871574 - 0.000116995323612242 - 9.36437496252317e-05 - 7.43473671127536e-05 - 5.86857640794439e-05 - 4.61338280788993e-05 - 3.61625196493734e-05 - 2.82897359676902e-05 - 2.21002054559031e-05 - 1.72483191033427e-05 - 1.34526986966598e-05 - 1.04875399672917e-05 - 8.17337044817344e-06 - 6.36846370671902e-06 - 4.96139109882323e-06 - 3.86480639873541e-06 - 3.01038070722099e-06 - 2.34473659411036e-06 - 1.82621639686851e-06 - 1.42233033391826e-06 - 1.10775029188525e-06 - 8.62737303994357e-07 - 6.7191146617396e-07 - 5.23291052400421e-07 - 4.07542626847936e-07 - 3.17396200591752e-07 - 2.47189310775136e-07 - 1.92511711184685e-07 - This is wrong
3. Comment	This test fails due to an indexing error.
4. This test is currently not executed	(disabled is 'Check the comment for the cat_gate_activation test.')

1.6. Can we get access to the calcium inactivation tables ?

1. Executed command	tabulate /Purkinje segments/soma/cat/cat_gate_inactivation
2. Expected output	tau: - 2.48232346483403e-05 - 2.81275776716263e-05 - 3.18713490451171e-05 - 3.61127079259058e-05 - 4.0917330384233e-05 - 4.63592633538075e-05 - 5.25217973580191e-05 - 5.94982994625541e-05 - 6.73929012450935e-05 - 7.63208595158889e-05 - 8.64082817513529e-05 - 9.7790705639851e-05 - 0.000110609701497741 - 0.000125006171144694 - 0.000141108280569085 - 0.000159010935546264 - 0.000178742431396589 - 0.00020021270215034 - 0.000223137444601811 - 0.000246935570820242 - 0.000270608110012524 - 0.000292630197046223 - 0.000310925603980611 - 0.000323029930144538 - 0.000326536796686297 - 0.000319797944521443 - 0.000302621441845721 - 0.000276559619565248 - 0.000244535095691783 - 0.000209975621454169 - 0.000175929907117437 - 0.000144547965871574 - 0.000116995323612242 - 9.36437496252317e-05 - 7.43473671127536e-05 - 5.86857640794439e-05 - 4.61338280788993e-05 - 3.61625196493734e-05 - 2.82897359676902e-05 - 2.21002054559031e-05 - 1.72483191033427e-05 - 1.34526986966598e-05 - 1.04875399672917e-05 - 8.17337044817344e-06 - 6.36846370671902e-06 - 4.96139109882323e-06 - 3.86480639873541e-06 - 3.01038070722099e-06 - 2.34473659411036e-06 - 1.82621639686851e-06 - 1.42233033391826e-06 - 1.10775029188525e-06 - 8.62737303994357e-07 - 6.7191146617396e-07 - 5.23291052400421e-07 - 4.07542626847936e-07 - 3.17396200591752e-07 - 2.47189310775136e-07 - 1.92511711184685e-07 - This is wrong
3. Comment	This test fails due to an indexing error.
4. This test is currently not executed	(disabled is 'Check the comment for the cat_gate_inactivation test.')