Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/purk_test

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simple simulations of parts of the purkinje cell model

1. Commands for a simple simulation of the purkinje cell model

1. Commands for a simple simulation of the purkinje cell model

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

1.1. Is startup successful ?

1. Expected output 
GENESIS 3 shell

1.2. Can we load the standard purkinje cell model ?

1. Executed command
ndf_load tests/cells/purk_test_segment.ndf
2. Expected output 







1.3. Can we find the root element of the model ?





1. Executed command
list_elements




2. Expected output 

- /purk_test_segment








1.4. Can we create a current clamp circuitry object ?





1. Executed command
inputclass_add perfectclamp current_injection_protocol name current_injection command 2e-9




2. Expected output 







1.5. Can we connect the current clamp circuitry to the purkinje cell soma ?





1. Executed command
input_add current_injection_protocol /purk_test_segment/segments/test_segment INJECT




2. Expected output 







1.6. Can we add an output for /purk_test_segment/segments/test_segment Vm ?





1. Executed command
output_add /purk_test_segment/segments/test_segment Vm




2. Expected output 







1.7. Can we add an output for /purk_test_segment/segments/test_segment/cat/cat_gate_activation state_m





1. Executed command
output_add /purk_test_segment/segments/test_segment/cat/cat_gate_activation state_m




2. Expected output 







1.8. Can we add an output for /purk_test_segment/segments/test_segment/cat/cat_gate_inactivation state_h





1. Executed command
output_add /purk_test_segment/segments/test_segment/cat/cat_gate_inactivation state_h




2. Expected output 







1.9. Can we add an output for /purk_test_segment/segments/test_segment/kdr state_m





1. Executed command
output_add /purk_test_segment/segments/test_segment/kdr state_m




2. Expected output 







1.10. Can we add an output for /purk_test_segment/segments/test_segment/kdr state_h





1. Executed command
output_add /purk_test_segment/segments/test_segment/kdr state_h




2. Expected output 







1.11. Can we add an output for /purk_test_segment/segments/test_segment/nap state_n





1. Executed command
output_add /purk_test_segment/segments/test_segment/nap state_n




2. Expected output 







1.12. Can we add an output for /purk_test_segment/segments/test_segment/naf state_m





1. Executed command
output_add /purk_test_segment/segments/test_segment/naf state_m




2. Expected output 







1.13. Can we add an output for /purk_test_segment/segments/test_segment/naf state_h





1. Executed command
output_add /purk_test_segment/segments/test_segment/naf state_h




2. Expected output 







1.14. Can we run the simulation ?





1. Executed command
run /purk_test_segment 0.1




2. Expected output 
genesis







1.15. Can we find the output ?





1. Expected output 
application_output_file: /tmp/output
expected_output_file: ./..//tests/specifications/strings/purkinje/purk_test.txt





2. Comment
only testing the last line of output