Main Neurospaces logo neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/ndf_save

Index
Up

various tests of the ndf_save command

1. Commands to load and save the traub91 model
2. Running the converted model with SSP to see if the conversion was done correctly
3. Commands to load and save the traub94 model
4. Running the converted model with SSP to see if the conversion was done correctly
5. Commands to load and save the purkinje cell model
6. Running the converted model with SSP to see if the conversion was done correctly

1. Commands to load and save the traub91 model

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

1.1. Is startup successful ?

1. Expected output 
GENESIS 3 shell

1.2. Can we load the traub91 model (1)?

1. Executed command
sli_load test-traub91-v0/traub91.g
2. Expected output 
Using hsolve

1.3. Can we write the traub91 model to an NDF file ?

1. Executed command
ndf_save /** /tmp/traub91.ndf
2. Expected output 







2. Running the converted model with SSP to see if the conversion was done correctly
Startup command : /usr/local/bin/ssp --time 0.15 --time-step 5e-5 --cell /tmp/traub91.ndf --model-name cell --output-fields /cell/soma->Vm --optimize --verbose --dump
Comments, Preparation, Reparation





1. Comment for this test definition
This test was derived from one of Dave Beeman's tutorial scripts




2. Preparation needed before the commands below : 
Create the output/ directory




3. And repared afterwards using : 
Remove the generated output files in the output/ directory







2.1. Can we compile the converted model description from SSP, traub91.ndf ?





1. Expected output 

Heccer (pcName) : (/cell)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (5e-05)
Intermediary (iCompartments) : (19)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (1)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (2)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (3)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (4)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (5)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (6)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (7)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (8)
Compartment (dCm) : (6.53703e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (4.57336e+06)
Compartment (dRm) : (4.58924e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (9)
Compartment (dCm) : (9.96669e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (2e-10)
Compartment (dRa) : (2.22372e+06)
Compartment (dRm) : (3.01003e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (10)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (11)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (12)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (13)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (14)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (15)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (16)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (17)
Compartment (dCm) : (5.01774e-11)
Compartment (dEm) : (-0.06)
Compartment (dInitVm) : (-0.06)
Compartment (dInject) : (0)
Compartment (dRa) : (5.97877e+06)
Compartment (dRm) : (5.97879e+08)
MinimumDegree (iEntries) : (19)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (1)
MinimumDegree (piChildren[1][0]) : (2)
MinimumDegree (piChildren[2]) : (1)
MinimumDegree (piChildren[2][0]) : (3)
MinimumDegree (piChildren[3]) : (1)
MinimumDegree (piChildren[3][0]) : (4)
MinimumDegree (piChildren[4]) : (1)
MinimumDegree (piChildren[4][0]) : (5)
MinimumDegree (piChildren[5]) : (1)
MinimumDegree (piChildren[5][0]) : (6)
MinimumDegree (piChildren[6]) : (1)
MinimumDegree (piChildren[6][0]) : (7)
MinimumDegree (piChildren[7]) : (1)
MinimumDegree (piChildren[7][0]) : (8)
MinimumDegree (piChildren[8]) : (1)
MinimumDegree (piChildren[8][0]) : (9)
MinimumDegree (piChildren[9]) : (1)
MinimumDegree (piChildren[9][0]) : (10)
MinimumDegree (piChildren[10]) : (1)
MinimumDegree (piChildren[10][0]) : (11)
MinimumDegree (piChildren[11]) : (1)
MinimumDegree (piChildren[11][0]) : (12)
MinimumDegree (piChildren[12]) : (1)
MinimumDegree (piChildren[12][0]) : (13)
MinimumDegree (piChildren[13]) : (1)
MinimumDegree (piChildren[13][0]) : (14)
MinimumDegree (piChildren[14]) : (1)
MinimumDegree (piChildren[14][0]) : (15)
MinimumDegree (piChildren[15]) : (1)
MinimumDegree (piChildren[15][0]) : (16)
MinimumDegree (piChildren[16]) : (1)
MinimumDegree (piChildren[16][0]) : (17)
MinimumDegree (piChildren[17]) : (1)
MinimumDegree (piChildren[17][0]) : (18)
MinimumDegree (piChildren[18]) : (0)
MinimumDegree (piForward[0]) : (18)
MinimumDegree (piForward[1]) : (17)
MinimumDegree (piForward[2]) : (16)
MinimumDegree (piForward[3]) : (15)
MinimumDegree (piForward[4]) : (14)
MinimumDegree (piForward[5]) : (13)
MinimumDegree (piForward[6]) : (12)
MinimumDegree (piForward[7]) : (11)
MinimumDegree (piForward[8]) : (10)
MinimumDegree (piForward[9]) : (9)
MinimumDegree (piForward[10]) : (8)
MinimumDegree (piForward[11]) : (7)
MinimumDegree (piForward[12]) : (6)
MinimumDegree (piForward[13]) : (5)
MinimumDegree (piForward[14]) : (4)
MinimumDegree (piForward[15]) : (3)
MinimumDegree (piForward[16]) : (2)
MinimumDegree (piForward[17]) : (1)
MinimumDegree (piForward[18]) : (0)
MinimumDegree (piBackward[0]) : (18)
MinimumDegree (piBackward[1]) : (17)
MinimumDegree (piBackward[2]) : (16)
MinimumDegree (piBackward[3]) : (15)
MinimumDegree (piBackward[4]) : (14)
MinimumDegree (piBackward[5]) : (13)
MinimumDegree (piBackward[6]) : (12)
MinimumDegree (piBackward[7]) : (11)
MinimumDegree (piBackward[8]) : (10)
MinimumDegree (piBackward[9]) : (9)
MinimumDegree (piBackward[10]) : (8)
MinimumDegree (piBackward[11]) : (7)
MinimumDegree (piBackward[12]) : (6)
MinimumDegree (piBackward[13]) : (5)
MinimumDegree (piBackward[14]) : (4)
MinimumDegree (piBackward[15]) : (3)
MinimumDegree (piBackward[16]) : (2)
MinimumDegree (piBackward[17]) : (1)
MinimumDegree (piBackward[18]) : (0)
Tables (iTabulatedGateCount) : (10)
Tabulated gate 0, interval (dStart) : (-0.1)
Tabulated gate 0, interval (dEnd) : (0.05)
Tabulated gate 0, interval (dStep) : (5e-05)
Tabulated gate 0, interpolation (iShape) : (0)
Tabulated gate 0, (iEntries) : (3000)
Tabulated gate 1, interval (dStart) : (-0.1)
Tabulated gate 1, interval (dEnd) : (0.05)
Tabulated gate 1, interval (dStep) : (5e-05)
Tabulated gate 1, interpolation (iShape) : (0)
Tabulated gate 1, (iEntries) : (3000)
Tabulated gate 2, interval (dStart) : (0)
Tabulated gate 2, interval (dEnd) : (1000)
Tabulated gate 2, interval (dStep) : (0.333333)
Tabulated gate 2, interpolation (iShape) : (0)
Tabulated gate 2, (iEntries) : (3000)
Tabulated gate 3, interval (dStart) : (-0.1)
Tabulated gate 3, interval (dEnd) : (0.05)
Tabulated gate 3, interval (dStep) : (5e-05)
Tabulated gate 3, interpolation (iShape) : (0)
Tabulated gate 3, (iEntries) : (3000)
Tabulated gate 4, interval (dStart) : (0)
Tabulated gate 4, interval (dEnd) : (1000)
Tabulated gate 4, interval (dStep) : (0.333333)
Tabulated gate 4, interpolation (iShape) : (0)
Tabulated gate 4, (iEntries) : (3000)
Tabulated gate 5, interval (dStart) : (-0.1)
Tabulated gate 5, interval (dEnd) : (0.05)
Tabulated gate 5, interval (dStep) : (5e-05)
Tabulated gate 5, interpolation (iShape) : (0)
Tabulated gate 5, (iEntries) : (3000)
Tabulated gate 6, interval (dStart) : (-0.1)
Tabulated gate 6, interval (dEnd) : (0.05)
Tabulated gate 6, interval (dStep) : (5e-05)
Tabulated gate 6, interpolation (iShape) : (0)
Tabulated gate 6, (iEntries) : (3000)
Tabulated gate 7, interval (dStart) : (-0.1)
Tabulated gate 7, interval (dEnd) : (0.05)
Tabulated gate 7, interval (dStep) : (5e-05)
Tabulated gate 7, interpolation (iShape) : (0)
Tabulated gate 7, (iEntries) : (3000)
Tabulated gate 8, interval (dStart) : (-0.1)
Tabulated gate 8, interval (dEnd) : (0.05)
Tabulated gate 8, interval (dStep) : (5e-05)
Tabulated gate 8, interpolation (iShape) : (0)
Tabulated gate 8, (iEntries) : (3000)
Tabulated gate 9, interval (dStart) : (-0.1)
Tabulated gate 9, interval (dEnd) : (0.05)
Tabulated gate 9, interval (dStep) : (5e-05)
Tabulated gate 9, interpolation (iShape) : (0)
Tabulated gate 9, (iEntries) : (3000)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: SET_DIAGONAL
00018 :: FORWARD_ELIMINATION   18
00019 :: SET_DIAGONAL
00020 :: FORWARD_ELIMINATION   20
00021 :: SET_DIAGONAL
00022 :: FORWARD_ELIMINATION   22
00023 :: SET_DIAGONAL
00024 :: FORWARD_ELIMINATION   24
00025 :: SET_DIAGONAL
00026 :: FORWARD_ELIMINATION   26
00027 :: SET_DIAGONAL
00028 :: FORWARD_ELIMINATION   28
00029 :: SET_DIAGONAL
00030 :: FORWARD_ELIMINATION   30
00031 :: SET_DIAGONAL
00032 :: FORWARD_ELIMINATION   32
00033 :: SET_DIAGONAL
00034 :: FORWARD_ELIMINATION   34
00035 :: FINISH
00036 :: BACKWARD_SUBSTITUTION   36
00037 :: FINISH_ROW
00038 :: BACKWARD_SUBSTITUTION   34
00039 :: FINISH_ROW
00040 :: BACKWARD_SUBSTITUTION   32
00041 :: FINISH_ROW
00042 :: BACKWARD_SUBSTITUTION   30
00043 :: FINISH_ROW
00044 :: BACKWARD_SUBSTITUTION   28
00045 :: FINISH_ROW
00046 :: BACKWARD_SUBSTITUTION   26
00047 :: FINISH_ROW
00048 :: BACKWARD_SUBSTITUTION   24
00049 :: FINISH_ROW
00050 :: BACKWARD_SUBSTITUTION   22
00051 :: FINISH_ROW
00052 :: BACKWARD_SUBSTITUTION   20
00053 :: FINISH_ROW
00054 :: BACKWARD_SUBSTITUTION   18
00055 :: FINISH_ROW
00056 :: BACKWARD_SUBSTITUTION   16
00057 :: FINISH_ROW
00058 :: BACKWARD_SUBSTITUTION   14
00059 :: FINISH_ROW
00060 :: BACKWARD_SUBSTITUTION   12
00061 :: FINISH_ROW
00062 :: BACKWARD_SUBSTITUTION   10
00063 :: FINISH_ROW
00064 :: BACKWARD_SUBSTITUTION    8
00065 :: FINISH_ROW
00066 :: BACKWARD_SUBSTITUTION    6
00067 :: FINISH_ROW
00068 :: BACKWARD_SUBSTITUTION    4
00069 :: FINISH_ROW
00070 :: BACKWARD_SUBSTITUTION    2
00071 :: FINISH_ROW
00072 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -1.00355e-10 0 498232 1.08417
00001 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00002 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00003 :: INITIALIZECHANNEL 0.08 8.36292e-08
00004 :: LOADVOLTAGETABLE
00005 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00006 :: CONCEPTGATE 1 1 (nil)							 0.973086
00007 :: UPDATECOMPARTMENTCURRENT
00008 :: REGISTERCHANNELCURRENT
00009 :: FLUXPOOL							 0
00010 :: INITIALIZECHANNEL -0.075 1.33807e-08
00011 :: CONCEPTGATE 2 1 (0)							 0
00012 :: UPDATECOMPARTMENTCURRENT
00013 :: INITIALIZECHANNEL -0.075 8.36292e-08
00014 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00015 :: CONCEPTGATE 4 -1 (0)							 0
00016 :: UPDATECOMPARTMENTCURRENT
00017 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00018 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00019 :: INITIALIZECHANNEL 0.08 8.36292e-08
00020 :: LOADVOLTAGETABLE
00021 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00022 :: CONCEPTGATE 1 1 (nil)							 0.973086
00023 :: UPDATECOMPARTMENTCURRENT
00024 :: REGISTERCHANNELCURRENT
00025 :: FLUXPOOL							 0
00026 :: INITIALIZECHANNEL -0.075 1.33807e-08
00027 :: CONCEPTGATE 2 1 (0)							 0
00028 :: UPDATECOMPARTMENTCURRENT
00029 :: INITIALIZECHANNEL -0.075 8.36292e-08
00030 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00031 :: CONCEPTGATE 4 -1 (0)							 0
00032 :: UPDATECOMPARTMENTCURRENT
00033 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00034 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00035 :: INITIALIZECHANNEL 0.08 2.0071e-07
00036 :: LOADVOLTAGETABLE
00037 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00038 :: CONCEPTGATE 1 1 (nil)							 0.973086
00039 :: UPDATECOMPARTMENTCURRENT
00040 :: REGISTERCHANNELCURRENT
00041 :: FLUXPOOL							 0
00042 :: INITIALIZECHANNEL -0.075 1.33807e-08
00043 :: CONCEPTGATE 2 1 (0)							 0
00044 :: UPDATECOMPARTMENTCURRENT
00045 :: INITIALIZECHANNEL -0.075 1.67258e-07
00046 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00047 :: CONCEPTGATE 4 -1 (0)							 0
00048 :: UPDATECOMPARTMENTCURRENT
00049 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00050 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00051 :: INITIALIZECHANNEL 0.08 2.0071e-07
00052 :: LOADVOLTAGETABLE
00053 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00054 :: CONCEPTGATE 1 1 (nil)							 0.973086
00055 :: UPDATECOMPARTMENTCURRENT
00056 :: REGISTERCHANNELCURRENT
00057 :: FLUXPOOL							 0
00058 :: INITIALIZECHANNEL -0.075 1.33807e-08
00059 :: CONCEPTGATE 2 1 (0)							 0
00060 :: UPDATECOMPARTMENTCURRENT
00061 :: INITIALIZECHANNEL -0.075 1.67258e-07
00062 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00063 :: CONCEPTGATE 4 -1 (0)							 0
00064 :: UPDATECOMPARTMENTCURRENT
00065 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00066 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00067 :: INITIALIZECHANNEL 0.055 3.34517e-07
00068 :: LOADVOLTAGETABLE
00069 :: CONCEPTGATE 5 2 (nil)							 0.014457
00070 :: CONCEPTGATE 6 1 (nil)							 0.995941
00071 :: UPDATECOMPARTMENTCURRENT
00072 :: INITIALIZECHANNEL 0.08 2.0071e-07
00073 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00074 :: CONCEPTGATE 1 1 (nil)							 0.973086
00075 :: UPDATECOMPARTMENTCURRENT
00076 :: REGISTERCHANNELCURRENT
00077 :: FLUXPOOL							 0
00078 :: INITIALIZECHANNEL -0.075 3.34517e-07
00079 :: CONCEPTGATE 7 1 (nil)							 0.00121745
00080 :: UPDATECOMPARTMENTCURRENT
00081 :: INITIALIZECHANNEL -0.075 1.33807e-08
00082 :: CONCEPTGATE 2 1 (0)							 0
00083 :: UPDATECOMPARTMENTCURRENT
00084 :: INITIALIZECHANNEL -0.075 1.67258e-07
00085 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00086 :: CONCEPTGATE 4 -1 (0)							 0
00087 :: UPDATECOMPARTMENTCURRENT
00088 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00089 :: EXPONENTIALDECAY 3.8845e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00090 :: INITIALIZECHANNEL 0.08 8.36292e-08
00091 :: LOADVOLTAGETABLE
00092 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00093 :: CONCEPTGATE 1 1 (nil)							 0.973086
00094 :: UPDATECOMPARTMENTCURRENT
00095 :: REGISTERCHANNELCURRENT
00096 :: FLUXPOOL							 0
00097 :: INITIALIZECHANNEL -0.075 1.33807e-08
00098 :: CONCEPTGATE 2 1 (0)							 0
00099 :: UPDATECOMPARTMENTCURRENT
00100 :: INITIALIZECHANNEL -0.075 8.36292e-08
00101 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00102 :: CONCEPTGATE 4 -1 (0)							 0
00103 :: UPDATECOMPARTMENTCURRENT
00104 :: COMPARTMENT							 -1.00355e-10 0 498232 1.1675
00105 :: EXPONENTIALDECAY 1.7265e+09 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00106 :: INITIALIZECHANNEL 0.055 2.50888e-07
00107 :: LOADVOLTAGETABLE
00108 :: CONCEPTGATE 5 2 (nil)							 0.014457
00109 :: CONCEPTGATE 6 1 (nil)							 0.995941
00110 :: UPDATECOMPARTMENTCURRENT
00111 :: INITIALIZECHANNEL 0.08 1.33807e-07
00112 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00113 :: CONCEPTGATE 1 1 (nil)							 0.973086
00114 :: UPDATECOMPARTMENTCURRENT
00115 :: REGISTERCHANNELCURRENT
00116 :: FLUXPOOL							 0
00117 :: INITIALIZECHANNEL -0.075 8.36292e-08
00118 :: CONCEPTGATE 7 1 (nil)							 0.00121745
00119 :: UPDATECOMPARTMENTCURRENT
00120 :: INITIALIZECHANNEL -0.075 1.33807e-08
00121 :: CONCEPTGATE 2 1 (0)							 0
00122 :: UPDATECOMPARTMENTCURRENT
00123 :: INITIALIZECHANNEL -0.075 3.34517e-07
00124 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00125 :: CONCEPTGATE 4 -1 (0)							 0
00126 :: UPDATECOMPARTMENTCURRENT
00127 :: COMPARTMENT							 -1.99334e-10 2e-10 250836 1.15559
00128 :: EXPONENTIALDECAY 8.701e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00129 :: INITIALIZECHANNEL 0.055 9.9667e-07
00130 :: LOADVOLTAGETABLE
00131 :: CONCEPTGATE 5 2 (nil)							 0.014457
00132 :: CONCEPTGATE 6 1 (nil)							 0.995941
00133 :: UPDATECOMPARTMENTCURRENT
00134 :: INITIALIZECHANNEL 0.08 1.32889e-07
00135 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00136 :: CONCEPTGATE 1 1 (nil)							 0.973086
00137 :: UPDATECOMPARTMENTCURRENT
00138 :: REGISTERCHANNELCURRENT
00139 :: FLUXPOOL							 0
00140 :: INITIALIZECHANNEL -0.075 4.98335e-07
00141 :: CONCEPTGATE 7 1 (nil)							 0.00121745
00142 :: UPDATECOMPARTMENTCURRENT
00143 :: INITIALIZECHANNEL -0.075 2.65779e-08
00144 :: CONCEPTGATE 2 1 (0)							 0
00145 :: UPDATECOMPARTMENTCURRENT
00146 :: INITIALIZECHANNEL -0.075 3.32223e-07
00147 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00148 :: CONCEPTGATE 4 -1 (0)							 0
00149 :: UPDATECOMPARTMENTCURRENT
00150 :: INITIALIZECHANNEL -0.075 1.66112e-07
00151 :: CONCEPTGATE 8 1 (nil)							 0.119301
00152 :: CONCEPTGATE 9 1 (nil)							 0.117152
00153 :: UPDATECOMPARTMENTCURRENT
00154 :: COMPARTMENT							 -1.30741e-10 0 382437 1.25644
00155 :: EXPONENTIALDECAY 1.3202e+09 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00156 :: INITIALIZECHANNEL 0.055 3.26851e-07
00157 :: LOADVOLTAGETABLE
00158 :: CONCEPTGATE 5 2 (nil)							 0.014457
00159 :: CONCEPTGATE 6 1 (nil)							 0.995941
00160 :: UPDATECOMPARTMENTCURRENT
00161 :: INITIALIZECHANNEL 0.08 1.74321e-07
00162 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00163 :: CONCEPTGATE 1 1 (nil)							 0.973086
00164 :: UPDATECOMPARTMENTCURRENT
00165 :: REGISTERCHANNELCURRENT
00166 :: FLUXPOOL							 0
00167 :: INITIALIZECHANNEL -0.075 1.0895e-07
00168 :: CONCEPTGATE 7 1 (nil)							 0.00121745
00169 :: UPDATECOMPARTMENTCURRENT
00170 :: INITIALIZECHANNEL -0.075 1.74321e-08
00171 :: CONCEPTGATE 2 1 (0)							 0
00172 :: UPDATECOMPARTMENTCURRENT
00173 :: INITIALIZECHANNEL -0.075 4.35802e-07
00174 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00175 :: CONCEPTGATE 4 -1 (0)							 0
00176 :: UPDATECOMPARTMENTCURRENT
00177 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00178 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00179 :: INITIALIZECHANNEL 0.08 1.0895e-07
00180 :: LOADVOLTAGETABLE
00181 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00182 :: CONCEPTGATE 1 1 (nil)							 0.973086
00183 :: UPDATECOMPARTMENTCURRENT
00184 :: REGISTERCHANNELCURRENT
00185 :: FLUXPOOL							 0
00186 :: INITIALIZECHANNEL -0.075 1.74321e-08
00187 :: CONCEPTGATE 2 1 (0)							 0
00188 :: UPDATECOMPARTMENTCURRENT
00189 :: INITIALIZECHANNEL -0.075 1.0895e-07
00190 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00191 :: CONCEPTGATE 4 -1 (0)							 0
00192 :: UPDATECOMPARTMENTCURRENT
00193 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00194 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00195 :: INITIALIZECHANNEL 0.055 4.35802e-07
00196 :: LOADVOLTAGETABLE
00197 :: CONCEPTGATE 5 2 (nil)							 0.014457
00198 :: CONCEPTGATE 6 1 (nil)							 0.995941
00199 :: UPDATECOMPARTMENTCURRENT
00200 :: INITIALIZECHANNEL 0.08 3.70431e-07
00201 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00202 :: CONCEPTGATE 1 1 (nil)							 0.973086
00203 :: UPDATECOMPARTMENTCURRENT
00204 :: REGISTERCHANNELCURRENT
00205 :: FLUXPOOL							 0
00206 :: INITIALIZECHANNEL -0.075 4.35802e-07
00207 :: CONCEPTGATE 7 1 (nil)							 0.00121745
00208 :: UPDATECOMPARTMENTCURRENT
00209 :: INITIALIZECHANNEL -0.075 1.74321e-08
00210 :: CONCEPTGATE 2 1 (0)							 0
00211 :: UPDATECOMPARTMENTCURRENT
00212 :: INITIALIZECHANNEL -0.075 3.26851e-07
00213 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00214 :: CONCEPTGATE 4 -1 (0)							 0
00215 :: UPDATECOMPARTMENTCURRENT
00216 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00217 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00218 :: INITIALIZECHANNEL 0.08 3.70431e-07
00219 :: LOADVOLTAGETABLE
00220 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00221 :: CONCEPTGATE 1 1 (nil)							 0.973086
00222 :: UPDATECOMPARTMENTCURRENT
00223 :: REGISTERCHANNELCURRENT
00224 :: FLUXPOOL							 0
00225 :: INITIALIZECHANNEL -0.075 1.74321e-08
00226 :: CONCEPTGATE 2 1 (0)							 0
00227 :: UPDATECOMPARTMENTCURRENT
00228 :: INITIALIZECHANNEL -0.075 3.26851e-07
00229 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00230 :: CONCEPTGATE 4 -1 (0)							 0
00231 :: UPDATECOMPARTMENTCURRENT
00232 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00233 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00234 :: INITIALIZECHANNEL 0.08 3.70431e-07
00235 :: LOADVOLTAGETABLE
00236 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00237 :: CONCEPTGATE 1 1 (nil)							 0.973086
00238 :: UPDATECOMPARTMENTCURRENT
00239 :: REGISTERCHANNELCURRENT
00240 :: FLUXPOOL							 0
00241 :: INITIALIZECHANNEL -0.075 1.74321e-08
00242 :: CONCEPTGATE 2 1 (0)							 0
00243 :: UPDATECOMPARTMENTCURRENT
00244 :: INITIALIZECHANNEL -0.075 3.26851e-07
00245 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00246 :: CONCEPTGATE 4 -1 (0)							 0
00247 :: UPDATECOMPARTMENTCURRENT
00248 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00249 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00250 :: INITIALIZECHANNEL 0.08 2.17901e-07
00251 :: LOADVOLTAGETABLE
00252 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00253 :: CONCEPTGATE 1 1 (nil)							 0.973086
00254 :: UPDATECOMPARTMENTCURRENT
00255 :: REGISTERCHANNELCURRENT
00256 :: FLUXPOOL							 0
00257 :: INITIALIZECHANNEL -0.075 1.74321e-08
00258 :: CONCEPTGATE 2 1 (0)							 0
00259 :: UPDATECOMPARTMENTCURRENT
00260 :: INITIALIZECHANNEL -0.075 3.26851e-07
00261 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00262 :: CONCEPTGATE 4 -1 (0)							 0
00263 :: UPDATECOMPARTMENTCURRENT
00264 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00265 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00266 :: INITIALIZECHANNEL 0.08 2.17901e-07
00267 :: LOADVOLTAGETABLE
00268 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00269 :: CONCEPTGATE 1 1 (nil)							 0.973086
00270 :: UPDATECOMPARTMENTCURRENT
00271 :: REGISTERCHANNELCURRENT
00272 :: FLUXPOOL							 0
00273 :: INITIALIZECHANNEL -0.075 1.74321e-08
00274 :: CONCEPTGATE 2 1 (0)							 0
00275 :: UPDATECOMPARTMENTCURRENT
00276 :: INITIALIZECHANNEL -0.075 3.26851e-07
00277 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00278 :: CONCEPTGATE 4 -1 (0)							 0
00279 :: UPDATECOMPARTMENTCURRENT
00280 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00281 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00282 :: INITIALIZECHANNEL 0.08 1.0895e-07
00283 :: LOADVOLTAGETABLE
00284 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00285 :: CONCEPTGATE 1 1 (nil)							 0.973086
00286 :: UPDATECOMPARTMENTCURRENT
00287 :: REGISTERCHANNELCURRENT
00288 :: FLUXPOOL							 0
00289 :: INITIALIZECHANNEL -0.075 1.74321e-08
00290 :: CONCEPTGATE 2 1 (0)							 0
00291 :: UPDATECOMPARTMENTCURRENT
00292 :: INITIALIZECHANNEL -0.075 1.0895e-07
00293 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00294 :: CONCEPTGATE 4 -1 (0)							 0
00295 :: UPDATECOMPARTMENTCURRENT
00296 :: COMPARTMENT							 -1.30741e-10 0 382437 1.16808
00297 :: EXPONENTIALDECAY 2.9705e+08 0 1.00188
			 (0) (nil) (nil) (nil)							 0
00298 :: INITIALIZECHANNEL 0.08 1.0895e-07
00299 :: LOADVOLTAGETABLE
00300 :: CONCEPTGATE 0 2 (nil)							 0.0141937
00301 :: CONCEPTGATE 1 1 (nil)							 0.973086
00302 :: UPDATECOMPARTMENTCURRENT
00303 :: REGISTERCHANNELCURRENT
00304 :: FLUXPOOL							 0
00305 :: INITIALIZECHANNEL -0.075 1.74321e-08
00306 :: CONCEPTGATE 2 1 (0)							 0
00307 :: UPDATECOMPARTMENTCURRENT
00308 :: INITIALIZECHANNEL -0.075 1.0895e-07
00309 :: CONCEPTGATE 3 1 (nil)							 0.0106418
00310 :: CONCEPTGATE 4 -1 (0)							 0
00311 :: UPDATECOMPARTMENTCURRENT
00312 :: COMPARTMENT							 -1.30741e-10 0 382437 1.08446
00313 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.08417)
VM Diagonals (pdDiagonals[1]) : (1.1675)
VM Diagonals (pdDiagonals[2]) : (1.1675)
VM Diagonals (pdDiagonals[3]) : (1.1675)
VM Diagonals (pdDiagonals[4]) : (1.1675)
VM Diagonals (pdDiagonals[5]) : (1.1675)
VM Diagonals (pdDiagonals[6]) : (1.1675)
VM Diagonals (pdDiagonals[7]) : (1.1675)
VM Diagonals (pdDiagonals[8]) : (1.15559)
VM Diagonals (pdDiagonals[9]) : (1.25644)
VM Diagonals (pdDiagonals[10]) : (1.16808)
VM Diagonals (pdDiagonals[11]) : (1.16808)
VM Diagonals (pdDiagonals[12]) : (1.16808)
VM Diagonals (pdDiagonals[13]) : (1.16808)
VM Diagonals (pdDiagonals[14]) : (1.16808)
VM Diagonals (pdDiagonals[15]) : (1.16808)
VM Diagonals (pdDiagonals[16]) : (1.16808)
VM Diagonals (pdDiagonals[17]) : (1.16808)
VM Diagonals (pdDiagonals[18]) : (1.08446)
VM Axial Resistances (pdAxres[0]) : (-0.0833335)
VM Axial Resistances (pdAxres[1]) : (-0.0833335)
VM Axial Resistances (pdAxres[2]) : (-0.0833335)
VM Axial Resistances (pdAxres[3]) : (-0.0833335)
VM Axial Resistances (pdAxres[4]) : (-0.0833335)
VM Axial Resistances (pdAxres[5]) : (-0.0833335)
VM Axial Resistances (pdAxres[6]) : (-0.0833335)
VM Axial Resistances (pdAxres[7]) : (-0.0833335)
VM Axial Resistances (pdAxres[8]) : (-0.0833335)
VM Axial Resistances (pdAxres[9]) : (-0.0833335)
VM Axial Resistances (pdAxres[10]) : (-0.0833335)
VM Axial Resistances (pdAxres[11]) : (-0.0833335)
VM Axial Resistances (pdAxres[12]) : (-0.0833335)
VM Axial Resistances (pdAxres[13]) : (-0.0833335)
VM Axial Resistances (pdAxres[14]) : (-0.0419543)
VM Axial Resistances (pdAxres[15]) : (-0.0833335)
VM Axial Resistances (pdAxres[16]) : (-0.171981)
VM Axial Resistances (pdAxres[17]) : (-0.1128)
VM Axial Resistances (pdAxres[18]) : (-0.0836226)
VM Axial Resistances (pdAxres[19]) : (-0.0836226)
VM Axial Resistances (pdAxres[20]) : (-0.0836226)
VM Axial Resistances (pdAxres[21]) : (-0.0836226)
VM Axial Resistances (pdAxres[22]) : (-0.0836226)
VM Axial Resistances (pdAxres[23]) : (-0.0836226)
VM Axial Resistances (pdAxres[24]) : (-0.0836226)
VM Axial Resistances (pdAxres[25]) : (-0.0836226)
VM Axial Resistances (pdAxres[26]) : (-0.0836226)
VM Axial Resistances (pdAxres[27]) : (-0.0836226)
VM Axial Resistances (pdAxres[28]) : (-0.0836226)
VM Axial Resistances (pdAxres[29]) : (-0.0836226)
VM Axial Resistances (pdAxres[30]) : (-0.0836226)
VM Axial Resistances (pdAxres[31]) : (-0.0836226)
VM Axial Resistances (pdAxres[32]) : (-0.0836226)
VM Axial Resistances (pdAxres[33]) : (-0.0836226)
VM Axial Resistances (pdAxres[34]) : (-0.0836226)
VM Axial Resistances (pdAxres[35]) : (-0.0836226)
VM Axial Resistances (pdAxres[36]) : (-0.0836226)
VM Axial Resistances (pdAxres[37]) : (-0.0836226)
VM Axial Resistances (pdAxres[38]) : (-0.0836226)
VM Axial Resistances (pdAxres[39]) : (-0.0836226)
VM Axial Resistances (pdAxres[40]) : (-0.0836226)
VM Axial Resistances (pdAxres[41]) : (-0.0836226)
VM Axial Resistances (pdAxres[42]) : (-0.0836226)
VM Axial Resistances (pdAxres[43]) : (-0.0836226)
VM Axial Resistances (pdAxres[44]) : (-0.0836226)
VM Axial Resistances (pdAxres[45]) : (-0.1128)
VM Axial Resistances (pdAxres[46]) : (-0.0833335)
VM Axial Resistances (pdAxres[47]) : (-0.0833335)
VM Axial Resistances (pdAxres[48]) : (-0.0833335)
VM Axial Resistances (pdAxres[49]) : (-0.0833335)
VM Axial Resistances (pdAxres[50]) : (-0.0833335)
VM Axial Resistances (pdAxres[51]) : (-0.0833335)
VM Axial Resistances (pdAxres[52]) : (-0.0833335)
VM Axial Resistances (pdAxres[53]) : (-0.0833335)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Axial Resistances (pdResults[8]) : (0)
VM Axial Resistances (pdResults[9]) : (0)
VM Axial Resistances (pdResults[10]) : (0)
VM Axial Resistances (pdResults[11]) : (0)
VM Axial Resistances (pdResults[12]) : (0)
VM Axial Resistances (pdResults[13]) : (0)
VM Axial Resistances (pdResults[14]) : (0)
VM Axial Resistances (pdResults[15]) : (0)
VM Axial Resistances (pdResults[16]) : (0)
VM Axial Resistances (pdResults[17]) : (0)
VM Axial Resistances (pdResults[18]) : (0)
VM Axial Resistances (pdResults[19]) : (0)
VM Axial Resistances (pdResults[20]) : (0)
VM Axial Resistances (pdResults[21]) : (0)
VM Axial Resistances (pdResults[22]) : (0)
VM Axial Resistances (pdResults[23]) : (0)
VM Axial Resistances (pdResults[24]) : (0)
VM Axial Resistances (pdResults[25]) : (0)
VM Axial Resistances (pdResults[26]) : (0)
VM Axial Resistances (pdResults[27]) : (0)
VM Axial Resistances (pdResults[28]) : (0)
VM Axial Resistances (pdResults[29]) : (0)
VM Axial Resistances (pdResults[30]) : (0)
VM Axial Resistances (pdResults[31]) : (0)
VM Axial Resistances (pdResults[32]) : (0)
VM Axial Resistances (pdResults[33]) : (0)
VM Axial Resistances (pdResults[34]) : (0)
VM Axial Resistances (pdResults[35]) : (0)
VM Axial Resistances (pdResults[36]) : (0)
VM Axial Resistances (pdResults[37]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.06)
VM Membrane Potentials (pdVms[1]) : (-0.06)
VM Membrane Potentials (pdVms[2]) : (-0.06)
VM Membrane Potentials (pdVms[3]) : (-0.06)
VM Membrane Potentials (pdVms[4]) : (-0.06)
VM Membrane Potentials (pdVms[5]) : (-0.06)
VM Membrane Potentials (pdVms[6]) : (-0.06)
VM Membrane Potentials (pdVms[7]) : (-0.06)
VM Membrane Potentials (pdVms[8]) : (-0.06)
VM Membrane Potentials (pdVms[9]) : (-0.06)
VM Membrane Potentials (pdVms[10]) : (-0.06)
VM Membrane Potentials (pdVms[11]) : (-0.06)
VM Membrane Potentials (pdVms[12]) : (-0.06)
VM Membrane Potentials (pdVms[13]) : (-0.06)
VM Membrane Potentials (pdVms[14]) : (-0.06)
VM Membrane Potentials (pdVms[15]) : (-0.06)
VM Membrane Potentials (pdVms[16]) : (-0.06)
VM Membrane Potentials (pdVms[17]) : (-0.06)
VM Membrane Potentials (pdVms[18]) : (-0.06)








2.2. Does the simulation produce the correct output (1)?





1. Expected output 
application_output_file: output/cell.out
expected_output_file: /usr/local/ns-sli/tests/specifications/strings/traub91_asym.ssp





2. Comment
Note that output is specified relative to the current directory







3. Commands to load and save the traub94 model
This command definition is currently disabled (disabled is 'this script does not work from the gshell because the include mechanism of G-2 depends on the current working directory.')
Startup command : bin/genesis-g3
(No model has been loaded for the following set of commands.)
3.1. Is startup successful ?





1. Expected output 
GENESIS 3 shell




2. This test is currently not executed
(disabled is 'this script does not work from the gshell because the include mechanism of G-2 depends on the current working directory.')







3.2. Can we load the traub91 model (2)?





1. Executed command
sli_load test-traub94cell-v0/traub94cell1.g




2. Expected output 
Using hsolve




3. This test is currently not executed
(disabled is 'this script does not work from the gshell because the include mechanism of G-2 depends on the current working directory.')







3.3. Can we write the traub94 model to an NDF file ?





1. Executed command
ndf_save /** /tmp/traub94cell1.ndf




2. Expected output 




3. This test is currently not executed
(disabled is 'this script does not work from the gshell because the include mechanism of G-2 depends on the current working directory.')







4. Running the converted model with SSP to see if the conversion was done correctly
This command definition is currently disabled (disabled is 'this test is disabled because the script that saves the traub94 only works from the ns-sli executable, but not from the gshell.  This is due to the broken include mechanism of G-2')
Startup command : /usr/local/bin/ssp --time 0.5 --time-step 0.00002 --cell /tmp/traub94cell1.ndf --model-name cell --output-fields /cell/soma->Vm --optimize
Comments, Preparation, Reparation





1. Comment for this test definition
This test was derived from one of Dave Beeman's tutorial scripts




2. Preparation needed before the commands below : 
Create the output/ directory




3. And repared afterwards using : 
Remove the generated output files in the output/ directory







4.1. Can we compile the converted model description from SSP, traub94cell1.ndf ?





1. Expected output 
Done




2. This test is currently not executed
(disabled is 'this test was not implemented')







4.2. Does the simulation produce the correct output (2)?





1. Expected output 
application_output_file: ./..//output/cell.out
expected_output_file: /usr/local/ns-sli/tests/specifications/strings/traub94_Vm.out.ssp





2. This test is currently not executed
(disabled is 'this test is disabled because the script that saves the traub94 only works from the ns-sli executable, but not from the gshell.  This is due to the broken include mechanism of G-2')







5. Commands to load and save the purkinje cell model
Startup command : bin/genesis-g3
(No model has been loaded for the following set of commands.)
5.1. Is startup successful ?





1. Expected output 
GENESIS 3 shell







5.2. Can we load the purkinje cell model and wait for the querymachine prompt ?





1. Executed command
sli_load /usr/local/ns-sli/tests/scripts/PurkM9_model/CURRENT9.g




2. Expected output 
tests/scripts/PurkM9_model/Purk2M9.p read: 1600 compartments







5.3. quit the querymachine





1. Executed command
quit




2. Expected output 







5.4. Can we write the purkinje cell model to an NDF file ?





1. Executed command
ndf_save /** /tmp/purkinje.ndf




2. Expected output 







6. Running the converted model with SSP to see if the conversion was done correctly
This command definition is currently disabled (disabled is 'this test is disabled because the script that saves the purkinje cell model is disabled.  The model-container parser does not parse the generated output because bison does not like so big input files.')
Startup command : /usr/local/bin/ssp --time 0.5 --time-step 0.00002 --cell /tmp/purkinje.ndf --model-name cell --output-fields /cell/soma->Vm --optimize
Comments, Preparation, Reparation





1. Preparation needed before the commands below : 
Create the output/ directory




2. And repared afterwards using : 
Remove the generated output files in the output/ directory







6.1. Can we compile the converted model description from SSP, purkinje.ndf ?





1. Expected output 
Done




2. This test is currently not executed
(disabled is 'this test was not implemented')







6.2. Does the simulation produce the correct output (3)?





1. Expected output 
application_output_file: ./..//output/cell.out
expected_output_file: /usr/local/ns-sli/tests/specifications/strings/PurkM9_soma_1.5nA.g3





2. This test is currently not executed
(disabled is 'this test is disabled because the script that saves the purkinje cell model is disabled.  The model-container parser does not parse the generated output because bison does not like so big input files.')