neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/ndf_library

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ndf library

1. Ndf library

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

1.1. Is startup successful ?

1. Expected output

GENESIS 3 shell

1.2. Can we find the NDF library ?

1. Executed command

library_show

2. Expected output


ndf_library:
  .:
    - algorithm_data/
    - cells/
    - channels/
    - chemesis/
    - contours/
    - conversions/
    - descriptor.yml
    - event_data/
    - examples/
    - fibers/
    - gates/
    - legacy/
    - mappers/
    - morphologies/
    - networks/
    - pools/
    - populations/
    - projectionqueries/
    - projections/
    - pulsegen/
    - segments/
    - tests/
    - utilities/

1.3. Can we find the NDF library ?

1. Executed command

library_show ndf

2. Expected output


ndf_library:
  .:
    - algorithm_data/
    - cells/
    - channels/
    - chemesis/
    - contours/
    - conversions/
    - descriptor.yml
    - event_data/
    - examples/
    - fibers/
    - gates/
    - legacy/
    - mappers/
    - morphologies/
    - networks/
    - pools/
    - populations/
    - projectionqueries/
    - projections/
    - pulsegen/
    - segments/
    - tests/
    - utilities/

1.4. Can we find the examples in the library ?

1. Executed command	library_show ndf examples
2. Expected output	ndf_library: examples: - hh_neuron.ndf - hh_soma.ndf - hh_soma_syns.ndf - nmda.ndf

1.5. Can we find the channel library ?

1. Executed command

library_show ndf channels

2. Expected output


ndf_library:
  channels:
    - K_hh_tchan.ndf
    - Na_hh_tchan.ndf
    - gaba.ndf
    - gaba.xml
    - golgi_ampa.ndf
    - golgi_gabaa.ndf
    - golgi_gabab.ndf
    - golgi_nmda.ndf
    - granule_ampa.ndf
    - granule_gabaa.ndf
    - granule_gabab.ndf
    - granule_nmda.ndf
    - hodgkin-huxley.ndf
    - hodgkin-huxley/
    - nmda.ndf
    - non_nmda.ndf
    - purkinje/
    - purkinje_basket.ndf
    - purkinje_climb.ndf
    - traub/

1.6. Can we find the segment library ?

1. Executed command

library_show ndf segments

2. Expected output


ndf_library:
  segments:
    - hodgkin_huxley.ndf
    - micron2.ndf
    - purkinje/
    - purkinje_maind_passive.ndf
    - purkinje_soma_passive.ndf
    - purkinje_spinyd_passive.ndf
    - purkinje_thickd_passive.ndf
    - spines/

1.7. Can we find the purkinje cell segment library ?

1. Executed command	library_show ndf segments/purkinje
2. Expected output	ndf_library: segments/purkinje: - maind.ndf - soma.ndf - spinyd.ndf - thickd.ndf

1.8. Can we find the single neuron library ?

1. Executed command

library_show ndf cells

2. Expected output


ndf_library:
  cells:
    - BDK5cell2-nolib.ndf
    - RScell-nolib.ndf
    - cell1.ndf
    - izhikevich.ndf
    - purkinje/
    - simplecell-nolib.ndf
    - stand_alone.ndf
    - traub91-nolib.ndf
    - traub94-nolib.ndf
    - traub95-nolib.ndf