neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/endogenous

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poissonian / endogenous synaptic activation

1. Commands to run the purkinje cell from an ndf file, endogenous / poissonian activation

2. Running the purkinje cell with endogenous / poissonian activation from a G3 batch file

3. Running the purkinje cell with current injection from a perl script

1. Commands to run the purkinje cell from an ndf file, endogenous / poissonian activation

This command definition is currently disabled (disabled is 'the gshell hangs after execution of one of the commands ...')

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

1.1. Is startup successful ?

1. Expected output	GENESIS 3 shell
2. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.2. Can we load the purkinje cell model ?

1. Executed command	ndf_load cells/purkinje/edsjb1994.ndf
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.3. Can we set the endogenous frequency for inhibitory channels ?

1. Executed command	runtime_parameter_add thickd::gaba::/Purk_GABA FREQUENCY 1
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.4. Can we set the endogenous frequency for excitatory channels ?

1. Executed command	runtime_parameter_add spine::/Purk_spine/head/par FREQUENCY 25
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.5. Can we get information about the runtime_parameters ?

1. Executed command

runtime_parameters_show

2. Expected output


runtime_parameters:
  - component_name: thickd::gaba::/Purk_GABA
    field: FREQUENCY
    value: 1
    value_type: number
  - component_name: spine::/Purk_spine/head/par
    field: FREQUENCY
    value: 25
    value_type: number

3. This test is currently not executed

(disabled is 'the gshell hangs after execution of one of the commands ...')

1.6. Can we define the output /Purkinje/segments/soma ?

1. Executed command	output_add /Purkinje/segments/soma Vm
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.7. Can we define the output /Purkinje/segments/soma/ca_pool ?

1. Executed command	output_add /Purkinje/segments/soma/ca_pool Ca
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.8. Can we define the output /Purkinje/segments/b0s01[0] ?

1. Executed command	output_add /Purkinje/segments/b0s01[0] Vm
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.9. Can we run the simulation ?

1. Executed command	run /Purkinje 0.1
2. Expected output
3. This test is currently not executed	(disabled is 'the gshell hangs after execution of one of the commands ...')

1.10. Can we find the output ?

1. Expected output	application_output_file: /tmp/output expected_output_file: ./..//tests/specifications/strings/purkinje/edsjb1994-endogenous.txt
2. This test is currently not executed	(disabled is 'not using ran1() as heccer random number generator')

2. Running the purkinje cell with endogenous / poissonian activation from a G3 batch file

Startup command : bin/genesis-g3 ./..//tests/scripts/simple_purkinje_endogenous.g3

2.1. Can we run the purkinje cell with endogenous / poissonian activation from a G3 batch file ?

1. Expected output	application_output_file: /tmp/output expected_output_file: ./..//tests/specifications/strings/purkinje/edsjb1994-endogenous.txt
2. This test is currently not executed	(disabled is 'not using ran1() as heccer random number generator')

3. Running the purkinje cell with current injection from a perl script

Startup command : ./..//tests/scripts/simple_purkinje_endogenous

(No model has been loaded for the following set of commands.)

3.1. Can we run the purkinje cell with endogenous / poissonian activation from a perl script ?

1. Expected output	application_output_file: /tmp/output expected_output_file: ./..//tests/specifications/strings/purkinje/edsjb1994-endogenous.txt
2. This test is currently not executed	(disabled is 'not using ran1() as heccer random number generator')