neurospaces 0.1675 Thu, 27 Dec 2007 15:58:18 -0600 hugo

Index of group ./specifications/chemesis3

Index
Up

chemesis3

1. Chemesis3, cal1, three pools one reaction

2. Chemesis3, cal1, three pools one reaction

3. Chemesis3, cal2, twice three pools one reaction

4. Chemesis3, cal2, twice three pools one reaction

1. Chemesis3, cal1, three pools one reaction

Startup command : tests/scripts/chemesis3-cal1

(No model has been loaded for the following set of commands.)

Comments, Preparation, Reparation

1. And repared afterwards using :

Remove output file from test run.

1.1. Is a chemesis3 model solved correctly, cal1, three pools one reaction ?

1. Expected output

application_output_file: /tmp/output
expected_output_file: /usr/local/ssp/tests/specifications/strings/chemesis3/cal1.txt

2. Chemesis3, cal1, three pools one reaction

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

Comments, Preparation, Reparation

1. And repared afterwards using :

Remove output file from test run.

2.1. Is startup successful ?

1. Expected output

GENESIS 3 shell

2.2. Can we enable the chemesis3 solver?

1. Executed command	component_load chemesis3
2. Expected output	genesis >

2.3. Can we load the chemesis3 cal1 model from the NDF file?

1. Executed command	ndf_load chemesis/cal1.ndf
2. Expected output

2.4. Can we set the chemesis3 time step?

1. Executed command	chemesis3_set_timestep 0.002
2. Expected output

2.5. Can we add the somaCa output?

1. Executed command	output_add /cal1/somaCa concentration
2. Expected output

2.6. Can we add the somaCabuf output?

1. Executed command	output_add /cal1/somaCabuf concentration
2. Expected output

2.7. Can we add the somabuf output?

1. Executed command	output_add /cal1/somabuf concentration
2. Expected output

2.8. Can we run the simulation?

1. Executed command	run /cal1 2
2. Expected output	application_output_file: /tmp/output expected_output_file: /usr/local/ssp/tests/specifications/strings/chemesis3/cal1.txt

3. Chemesis3, cal2, twice three pools one reaction

This command definition is currently disabled (disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

Startup command : tests/scripts/chemesis3-cal2

(No model has been loaded for the following set of commands.)

Comments, Preparation, Reparation

1. And repared afterwards using :

Remove output file from test run.

3.1. Is a chemesis3 model solved correctly, cal2, twice three pools one reaction ?

1. Expected output

application_output_file: /tmp/output
expected_output_file: /usr/local/ssp/tests/specifications/strings/chemesis3/cal2.txt

2. This test is currently not executed

(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4. Chemesis3, cal2, twice three pools one reaction

This command definition is currently disabled (disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

Startup command : bin/genesis-g3

(No model has been loaded for the following set of commands.)

Comments, Preparation, Reparation

1. And repared afterwards using :

Remove output file from test run.

4.1. Is startup successful ?

1. Expected output	GENESIS 3 shell
2. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.2. Can we enable the chemesis3 solver?

1. Executed command	component_load chemesis3
2. Expected output	genesis >
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.3. Can we load the chemesis3 cal2 model from the NDF file?

1. Executed command	ndf_load chemesis/cal2.ndf
2. Expected output
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.4. Can we set the chemesis3 time step?

1. Executed command	chemesis3_set_timestep 0.002
2. Expected output
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.5. Can we add the somaCa output?

1. Executed command	output_add /cal2/somaCa concentration
2. Expected output
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.6. Can we add the somaCabuf output?

1. Executed command	output_add /cal2/somaCabuf concentration
2. Expected output
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.7. Can we add the somabuf output?

1. Executed command	output_add /cal2/somabuf concentration
2. Expected output
3. This test is currently not executed	(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')

4.8. Can we run the simulation?

1. Executed command

run /cal2 2

2. Expected output

application_output_file: /tmp/output
expected_output_file: /usr/local/ssp/tests/specifications/strings/chemesis3/cal2.txt

3. This test is currently not executed

(disabled is 'the model-container integrator does not instantiate diffusion elements correctly, working on it')