Genesis 2 Backwards Compatibility Bridge

Index of group ./specifications/traub94

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the traub94 model

1. A very small subset of the traub94 model

2. Running the converted model with SSP to see if the conversion was done correctly

3. The traub94 model

4. Running the converted model with SSP to see if the conversion was done correctly

1. A very small subset of the traub94 model

Startup command : src/ns-sli ..//tests/scripts/test-traub94cell-v0/traub94cell1-soma.g

Comments, Preparation, Reparation

1. Comment for this test definition	This test was derived from one of Dave Beeman's tutorial scripts, does not use the G2 generated file.
2. Preparation needed before the commands below :	Create the output/ directory
3. And repared afterwards using :	Remove the generated output files in the output/ directory

1.1. Does the script run a simulation (1)?

1. Expected output

END:

1.2. Can we save the model as an NDF file -- library ?

1. Executed command	call model_container NEUROSPACES_COMMAND "export library ndf /tmp/traub94cell1-soma.ndf /cell/**"
2. Expected output	genesis

1.3. Can we quit the simulator such that output is flushed ?

1. Executed command	quit
2. Expected output

1.4. Is the generated output correct (1)?

1. Expected output

application_output_file: output/traub94_Vm.out.soma
expected_output_file: ..//tests/specifications/strings/traub94_Vm.out.soma.g3

2. Comment

there are serious deviations from the G-2 generated output file, unclear why, but it maybe related to float and double precision number (in)accuracies.

2. Running the converted model with SSP to see if the conversion was done correctly

Startup command : /usr/local/bin/ssp --time 0.5 --time-step 0.00002 --cell /tmp/traub94cell1-soma.ndf --model-name cell --output-fields /cell/soma->Vm --optimize

Comments, Preparation, Reparation

1. Comment for this test definition	This test was derived from one of Dave Beeman's tutorial scripts
2. Preparation needed before the commands below :	Create the output/ directory
3. And repared afterwards using :	Remove the generated output files in the output/ directory

2.1. Can we compile the converted model description from SSP, traub94cell1-soma.ndf ?

1. Expected output	not implemented
2. This test is currently not executed	(disabled is 'this test was not implemented')

2.2. Does the simulation produce the correct output (1)?

1. Expected output

application_output_file: ..//output/cell.out
expected_output_file: ..//tests/specifications/strings/traub94_Vm.out.soma.ssp

3. The traub94 model

Startup command : src/ns-sli ..//tests/scripts/test-traub94cell-v0/traub94cell1.g

Comments, Preparation, Reparation

1. Comment for this test definition	This test was derived from one of Dave Beeman's tutorial scripts, does not use the G2 generated file.
2. Preparation needed before the commands below :	Create the output/ directory
3. And repared afterwards using :	Remove the generated output files in the output/ directory

3.1. Does the script run a simulation (2)?

1. Expected output

END:

3.2. Can we save the model as an NDF file -- library ?

1. Executed command	call model_container NEUROSPACES_COMMAND "export library ndf /tmp/traub94cell1.ndf /cell/**"
2. Expected output	genesis

3.3. Can we quit the simulator such that output is flushed ?

1. Executed command	quit
2. Expected output

3.4. Is the generated output correct (2)?

1. Expected output	application_output_file: output/traub94_Vm.out expected_output_file: ..//tests/specifications/strings/traub94_Vm.out.g3
2. Comment	small deviations from the G-2 generated output file

4. Running the converted model with SSP to see if the conversion was done correctly

Startup command : /usr/local/bin/ssp --time 0.5 --time-step 0.00002 --cell /tmp/traub94cell1.ndf --model-name cell --output-fields /cell/soma->Vm --optimize

Comments, Preparation, Reparation

1. Comment for this test definition	This test was derived from one of Dave Beeman's tutorial scripts
2. Preparation needed before the commands below :	Create the output/ directory
3. And repared afterwards using :	Remove the generated output files in the output/ directory

4.1. Can we compile the converted model description from SSP, traub94cell1.ndf ?

1. Expected output	Done
2. This test is currently not executed	(disabled is 'this test was not implemented')

4.2. Does the simulation produce the correct output (2)?

1. Expected output

application_output_file: ..//output/cell.out
expected_output_file: ..//tests/specifications/strings/traub94_Vm.out.ssp