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readcell parameters and coordinates

1. Readcell coordinates
2. Readcell parameters and parameter scaling
3. A test of the readfile function.

1. Readcell coordinates

Startup command : src/ns-sli ..//tests/scripts/readcell/readcell_simple.g

1.1. Can we enter the querymachine ?

1. Executed command
call model_container NEUROSPACES_QUERY
2. Expected output 







1.2. Are the soma coordinates correct ?





1. Executed command
printcoordinates c / /test/soma




2. Expected output 
cached coordinate x = 0
cached coordinate y = 0
cached coordinate z = 2.8e-05








1.3. Is the soma DIA diameter correct ?





1. Executed command
printparameter /test/soma DIA




2. Expected output 
value = 1.9e-05








1.4. Is the soma LENGTH correct ?





1. Executed command
printparameter /test/soma LENGTH




2. Expected output 
value = 2.8e-05








1.5. Are the primary_dend coordinates correct ?





1. Executed command
printcoordinates c / /test/primary_dend




2. Expected output 
cached coordinate x = 0
cached coordinate y = 0
cached coordinate z = 0.00066








1.6. Are the glom1 coordinates correct ?





1. Executed command
printcoordinates c / /test/glom1




2. Expected output 
cached coordinate x = 4e-05
cached coordinate y = 4e-05
cached coordinate z = 0.00072








1.7. Are the glom2 coordinates correct ?





1. Executed command
printcoordinates c / /test/glom2




2. Expected output 
cached coordinate x = -4e-05
cached coordinate y = 4e-05
cached coordinate z = 0.00072








1.8. Are the glom3 coordinates correct ?





1. Executed command
printcoordinates c / /test/glom3




2. Expected output 
cached coordinate x = -4e-05
cached coordinate y = -4e-05
cached coordinate z = 0.00072








1.9. Are the glom4 coordinates correct ?





1. Executed command
printcoordinates c / /test/glom4




2. Expected output 
cached coordinate x = 4e-05
cached coordinate y = -4e-05
cached coordinate z = 0.00072








1.10. Are the second_dend1 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend1




2. Expected output 
cached coordinate x = 0
cached coordinate y = 0.0002
cached coordinate z = 6.8e-05








1.11. Are the second_dend11 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend11




2. Expected output 
cached coordinate x = 0.0002
cached coordinate y = 0.0008
cached coordinate z = 0.000128








1.12. Are the second_dend12 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend12




2. Expected output 
cached coordinate x = -0.0002
cached coordinate y = 0.0008
cached coordinate z = 0.000128








1.13. Are the second_dend2 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend2




2. Expected output 
cached coordinate x = 0
cached coordinate y = -0.0002
cached coordinate z = 6.8e-05








1.14. Are the second_dend21 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend21




2. Expected output 
cached coordinate x = 0.0002
cached coordinate y = -0.0008
cached coordinate z = 0.000128








1.15. Are the second_dend22 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend22




2. Expected output 
cached coordinate x = -0.0002
cached coordinate y = -0.0008
cached coordinate z = 0.000128








1.16. Are the second_dend3 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend3




2. Expected output 
cached coordinate x = 0.0002
cached coordinate y = 0
cached coordinate z = 6.8e-05








1.17. Are the second_dend31 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend31




2. Expected output 
cached coordinate x = 0.0008
cached coordinate y = 0.0002
cached coordinate z = 0.000128








1.18. Are the second_dend32 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend32




2. Expected output 
cached coordinate x = 0.0008
cached coordinate y = -0.0002
cached coordinate z = 0.000128








1.19. Are the second_dend4 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend4




2. Expected output 
cached coordinate x = -0.0002
cached coordinate y = 0
cached coordinate z = 6.8e-05








1.20. Are the second_dend41 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend41




2. Expected output 
cached coordinate x = -0.0008
cached coordinate y = 0.0002
cached coordinate z = 0.000128








1.21. Are the second_dend42 coordinates correct ?





1. Executed command
printcoordinates c / /test/second_dend42




2. Expected output 
cached coordinate x = -0.0008
cached coordinate y = -0.0002
cached coordinate z = 0.000128








2. Readcell parameters and parameter scaling
Startup command : src/ns-sli ..//tests/scripts/readcell/readcell_simple.g
2.1. Is the soma CM correct ?





1. Executed command
printparameter /test/soma CM




2. Expected output 
value = 0.01








2.2. Is the soma CM correct ?





1. Executed command
printparameterscaled /test/soma CM




2. Expected output 
scaled value = 1.67133e-11








2.3. Is the soma RM correct ?





1. Executed command
printparameter /test/soma RM




2. Expected output 
value = 4








2.4. Is the soma RM correct ?





1. Executed command
printparameterscaled /test/soma RM




2. Expected output 
scaled value = 2.39331e+09








2.5. Is the soma RA correct ?





1. Executed command
printparameter /test/soma RA




2. Expected output 
value = 0.5








2.6. Is the soma RA correct ?





1. Executed command
printparameterscaled /test/soma RA




2. Expected output 
scaled value = 49377.7








2.7. Is the glom1 CM correct ?





1. Executed command
printparameter /test/glom1 CM




2. Expected output 
value = 0.01








2.8. Is the glom1 CM correct ?





1. Executed command
printparameterscaled /test/glom1 CM




2. Expected output 
scaled value = 2.59062e-12








2.9. Is the glom1 RM correct ?





1. Executed command
printparameter /test/glom1 RM




2. Expected output 
value = 2








2.10. Is the glom1 RM correct ?





1. Executed command
printparameterscaled /test/glom1 RM




2. Expected output 
scaled value = 7.72015e+09








2.11. Is the glom1 RA correct ?





1. Executed command
printparameter /test/glom1 RA




2. Expected output 
value = 0.5








2.12. Is the glom1 RA correct ?





1. Executed command
printparameterscaled /test/glom1 RA




2. Expected output 
scaled value = 5.2497e+07








2.13. Is the glom2 CM correct ?





1. Executed command
printparameter /test/glom2 CM




2. Expected output 
value = 0.01








2.14. Is the glom2 CM correct ?





1. Executed command
printparameterscaled /test/glom2 CM




2. Expected output 
scaled value = 2.59062e-12








2.15. Is the glom2 RM correct ?





1. Executed command
printparameter /test/glom2 RM




2. Expected output 
value = 2








2.16. Is the glom2 RM correct ?





1. Executed command
printparameterscaled /test/glom2 RM




2. Expected output 
scaled value = 7.72015e+09








2.17. Is the glom2 RA correct ?





1. Executed command
printparameter /test/glom2 RA




2. Expected output 
value = 0.5








2.18. Is the glom2 RA correct ?





1. Executed command
printparameterscaled /test/glom2 RA




2. Expected output 
scaled value = 5.2497e+07








2.19. Is the glom3 CM correct ?





1. Executed command
printparameter /test/glom3 CM




2. Expected output 
value = 0.01








2.20. Is the glom3 CM correct ?





1. Executed command
printparameterscaled /test/glom3 CM




2. Expected output 
scaled value = 2.59062e-12








2.21. Is the glom3 RM correct ?





1. Executed command
printparameter /test/glom3 RM




2. Expected output 
value = 2








2.22. Is the glom3 RM correct ?





1. Executed command
printparameterscaled /test/glom3 RM




2. Expected output 
scaled value = 7.72015e+09








2.23. Is the glom3 RA correct ?





1. Executed command
printparameter /test/glom3 RA




2. Expected output 
value = 0.5








2.24. Is the glom3 RA correct ?





1. Executed command
printparameterscaled /test/glom3 RA




2. Expected output 
scaled value = 5.2497e+07








2.25. Is the primary_dend CM correct ?





1. Executed command
printparameter /test/primary_dend CM




2. Expected output 
value = 0.01








2.26. Is the primary_dend CM correct ?





1. Executed command
printparameterscaled /test/primary_dend CM




2. Expected output 
scaled value = 1.38984e-10








2.27. Is the primary_dend RM correct ?





1. Executed command
printparameter /test/primary_dend RM




2. Expected output 
value = 2








2.28. Is the primary_dend RM correct ?





1. Executed command
printparameterscaled /test/primary_dend RM




2. Expected output 
scaled value = 1.43901e+08








2.29. Is the primary_dend RA correct ?





1. Executed command
printparameter /test/primary_dend RA




2. Expected output 
value = 0.5








2.30. Is the primary_dend RA correct ?





1. Executed command
printparameterscaled /test/primary_dend RA




2. Expected output 
scaled value = 8.2111e+06








2.31. Is the second_dend1 CM correct ?





1. Executed command
printparameter /test/second_dend1 CM




2. Expected output 
value = 0.01








2.32. Is the second_dend1 CM correct ?





1. Executed command
printparameterscaled /test/second_dend1 CM




2. Expected output 
scaled value = 2.56305e-11








2.33. Is the second_dend1 RM correct ?





1. Executed command
printparameter /test/second_dend1 RM




2. Expected output 
value = 2








2.34. Is the second_dend1 RM correct ?





1. Executed command
printparameterscaled /test/second_dend1 RM




2. Expected output 
scaled value = 7.80321e+08








2.35. Is the second_dend1 RA correct ?





1. Executed command
printparameter /test/second_dend1 RA




2. Expected output 
value = 0.5








2.36. Is the second_dend1 RA correct ?





1. Executed command
printparameterscaled /test/second_dend1 RA




2. Expected output 
scaled value = 8.11534e+06








2.37. Is the second_dend11 CM correct ?





1. Executed command
printparameter /test/second_dend11 CM




2. Expected output 
value = 0.01








2.38. Is the second_dend11 CM correct ?





1. Executed command
printparameterscaled /test/second_dend11 CM




2. Expected output 
scaled value = 5.98752e-11








2.39. Is the second_dend11 RM correct ?





1. Executed command
printparameter /test/second_dend11 RM




2. Expected output 
value = 2








2.40. Is the second_dend11 RM correct ?





1. Executed command
printparameterscaled /test/second_dend11 RM




2. Expected output 
scaled value = 3.34028e+08








2.41. Is the second_dend11 RA correct ?





1. Executed command
printparameter /test/second_dend11 RA




2. Expected output 
value = 0.5








2.42. Is the second_dend11 RA correct ?





1. Executed command
printparameterscaled /test/second_dend11 RA




2. Expected output 
scaled value = 4.49379e+07








2.43. Is the second_dend12 CM correct ?





1. Executed command
printparameter /test/second_dend12 CM




2. Expected output 
value = 0.01








2.44. Is the second_dend12 CM correct ?





1. Executed command
printparameterscaled /test/second_dend12 CM




2. Expected output 
scaled value = 5.98752e-11








2.45. Is the second_dend12 RM correct ?





1. Executed command
printparameter /test/second_dend12 RM




2. Expected output 
value = 2








2.46. Is the second_dend12 RM correct ?





1. Executed command
printparameterscaled /test/second_dend12 RM




2. Expected output 
scaled value = 3.34028e+08








2.47. Is the second_dend12 RA correct ?





1. Executed command
printparameter /test/second_dend12 RA




2. Expected output 
value = 0.5








2.48. Is the second_dend12 RA correct ?





1. Executed command
printparameterscaled /test/second_dend12 RA




2. Expected output 
scaled value = 4.49379e+07








2.49. Is the second_dend2 CM correct ?





1. Executed command
printparameter /test/second_dend2 CM




2. Expected output 
value = 0.01








2.50. Is the second_dend2 CM correct ?





1. Executed command
printparameterscaled /test/second_dend2 CM




2. Expected output 
scaled value = 2.56305e-11








2.51. Is the second_dend2 RM correct ?





1. Executed command
printparameter /test/second_dend2 RM




2. Expected output 
value = 2








2.52. Is the second_dend2 RM correct ?





1. Executed command
printparameterscaled /test/second_dend2 RM




2. Expected output 
scaled value = 7.80321e+08








2.53. Is the second_dend2 RA correct ?





1. Executed command
printparameter /test/second_dend2 RA




2. Expected output 
value = 0.5








2.54. Is the second_dend2 RA correct ?





1. Executed command
printparameterscaled /test/second_dend2 RA




2. Expected output 
scaled value = 8.11534e+06








2.55. Is the second_dend3 CM correct ?





1. Executed command
printparameter /test/second_dend3 CM




2. Expected output 
value = 0.01








2.56. Is the second_dend3 CM correct ?





1. Executed command
printparameterscaled /test/second_dend3 CM




2. Expected output 
scaled value = 2.56305e-11








2.57. Is the second_dend3 RM correct ?





1. Executed command
printparameter /test/second_dend3 RM




2. Expected output 
value = 2








2.58. Is the second_dend3 RM correct ?





1. Executed command
printparameterscaled /test/second_dend3 RM




2. Expected output 
scaled value = 7.80321e+08








2.59. Is the second_dend3 RA correct ?





1. Executed command
printparameter /test/second_dend3 RA




2. Expected output 
value = 0.5








2.60. Is the second_dend3 RA correct ?





1. Executed command
printparameterscaled /test/second_dend3 RA




2. Expected output 
scaled value = 8.11534e+06








2.61. Is the second_dend31 CM correct ?





1. Executed command
printparameter /test/second_dend31 CM




2. Expected output 
value = 0.01








2.62. Is the second_dend31 CM correct ?





1. Executed command
printparameterscaled /test/second_dend31 CM




2. Expected output 
scaled value = 5.98752e-11








2.63. Is the second_dend31 RM correct ?





1. Executed command
printparameter /test/second_dend31 RM




2. Expected output 
value = 2








2.64. Is the second_dend31 RM correct ?





1. Executed command
printparameterscaled /test/second_dend31 RM




2. Expected output 
scaled value = 3.34028e+08








2.65. Is the second_dend31 RA correct ?





1. Executed command
printparameter /test/second_dend31 RA




2. Expected output 
value = 0.5








2.66. Is the second_dend31 RA correct ?





1. Executed command
printparameterscaled /test/second_dend31 RA




2. Expected output 
scaled value = 4.49379e+07








2.67. Is the second_dend32 CM correct ?





1. Executed command
printparameter /test/second_dend32 CM




2. Expected output 
value = 0.01








2.68. Is the second_dend32 CM correct ?





1. Executed command
printparameterscaled /test/second_dend32 CM




2. Expected output 
scaled value = 5.98752e-11








2.69. Is the second_dend32 RM correct ?





1. Executed command
printparameter /test/second_dend32 RM




2. Expected output 
value = 2








2.70. Is the second_dend32 RM correct ?





1. Executed command
printparameterscaled /test/second_dend32 RM




2. Expected output 
scaled value = 3.34028e+08








2.71. Is the second_dend32 RA correct ?





1. Executed command
printparameter /test/second_dend32 RA




2. Expected output 
value = 0.5








2.72. Is the second_dend32 RA correct ?





1. Executed command
printparameterscaled /test/second_dend32 RA




2. Expected output 
scaled value = 4.49379e+07








2.73. Is the second_dend4 CM correct ?





1. Executed command
printparameter /test/second_dend4 CM




2. Expected output 
value = 0.01








2.74. Is the second_dend4 CM correct ?





1. Executed command
printparameterscaled /test/second_dend4 CM




2. Expected output 
scaled value = 2.56305e-11








2.75. Is the second_dend4 RM correct ?





1. Executed command
printparameter /test/second_dend4 RM




2. Expected output 
value = 2








2.76. Is the second_dend4 RM correct ?





1. Executed command
printparameterscaled /test/second_dend4 RM




2. Expected output 
scaled value = 7.80321e+08








2.77. Is the second_dend4 RA correct ?





1. Executed command
printparameter /test/second_dend4 RA




2. Expected output 
value = 0.5








2.78. Is the second_dend4 RA correct ?





1. Executed command
printparameterscaled /test/second_dend4 RA




2. Expected output 
scaled value = 8.11534e+06








2.79. Is the second_dend41 CM correct ?





1. Executed command
printparameter /test/second_dend41 CM




2. Expected output 
value = 0.01








2.80. Is the second_dend41 CM correct ?





1. Executed command
printparameterscaled /test/second_dend41 CM




2. Expected output 
scaled value = 5.98752e-11








2.81. Is the second_dend41 RM correct ?





1. Executed command
printparameter /test/second_dend41 RM




2. Expected output 
value = 2








2.82. Is the second_dend41 RM correct ?





1. Executed command
printparameterscaled /test/second_dend41 RM




2. Expected output 
scaled value = 3.34028e+08








2.83. Is the second_dend41 RA correct ?





1. Executed command
printparameter /test/second_dend41 RA




2. Expected output 
value = 0.5








2.84. Is the second_dend41 RA correct ?





1. Executed command
printparameterscaled /test/second_dend41 RA




2. Expected output 
scaled value = 4.49379e+07








2.85. Is the second_dend42 CM correct ?





1. Executed command
printparameter /test/second_dend42 CM




2. Expected output 
value = 0.01








2.86. Is the second_dend42 CM correct ?





1. Executed command
printparameterscaled /test/second_dend42 CM




2. Expected output 
scaled value = 5.98752e-11








2.87. Is the second_dend42 RM correct ?





1. Executed command
printparameter /test/second_dend42 RM




2. Expected output 
value = 2








2.88. Is the second_dend42 RM correct ?





1. Executed command
printparameterscaled /test/second_dend42 RM




2. Expected output 
scaled value = 3.34028e+08








2.89. Is the second_dend42 RA correct ?





1. Executed command
printparameter /test/second_dend42 RA




2. Expected output 
value = 0.5








2.90. Is the second_dend42 RA correct ?





1. Executed command
printparameterscaled /test/second_dend42 RA




2. Expected output 
scaled value = 4.49379e+07








3. A test of the readfile function.
Startup command : src/ns-sli ..//tests/scripts/readcell/readcell_reset.g
3.1. Does the application report that it writes its output?





1. Expected output 
output written







3.2. Can we perform a reset and step on a cell morphology loaded via readcell?





1. Expected output 
application_output_file: /tmp/readcell_reset.txt
expected_output_file: ..//tests/specifications/strings/readcell_reset.txt