| 1. Expected output |
--- !!perl/hash:SSP
analyzers:
dumper:
initializers:
- arguments:
- source: model_container::/singlep
- ~
- ~
method: dump
module_name: Heccer
package: Heccer::Dumper
application_classes:
analyzers:
default:
- method: analyze
priority: 95
finishers:
default:
- method: finish
priority: 140
initializers:
default:
- method: compile
- method: connect
- method: instantiate_inputs
- method: instantiate_outputs
- method: initiate
- method: optimize
priority: 80
modifiers:
default: \[\]
priority: 50
results:
default: \[\]
priority: 170
services:
default:
- method: instantiate_services
priority: 20
simulation:
default: \[\]
priority: 110
apply:
simulation:
- arguments:
- 0.05
- verbose: 0
method: advance
models:
- granular_parameters: \[\]
modelname: /singlep
solverclass: heccer
name: 'builtin cell configuration, applied to: singlep'
outputclasses:
double_2_ascii:
module_name: Heccer
options:
filename: ./output/singlep.out
package: Heccer::Output
outputs:
- component_name: /singlep/segments/soma
field: Vm
outputclass: double_2_ascii
services:
model_container:
initializers:
- arguments:
-
- .*?/ssp
- -P
- tests/cells/singlep.ndf
method: read
model_library: /usr/local/neurospaces/models/library
module_name: Neurospaces
solverclasses:
heccer:
module_name: Heccer
service_name: model_container
usage: |2
Simulate a single model neuron, default is to output the membrane potential of the soma.
Use the options to inject current in the soma \(--inject-magnitude\), or alternatively
to set a command voltage \(--perfectclamp\).
The model's soma segment must reside in a SEGMENT_GROUP with name "segments".
The name of the model neuron is inferred from the name of the model description file.
\(e.g. a model description file called "hh_neuron.ndf" is assumed to define a model neuron
called "hh_neuron"\).
--model-name overwrite the default model name.
--steps sets number of steps
verbose: ~
|