Index of group ./specifications/synaptic


Index
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synaptic channels

1. Synaptic (springmass) channel integration, smaller time step
2. Synaptic (springmass) channel integration, larger time step
3. Synaptic (springmass) channel integration, endogenous firing
4. Synaptic (springmass) channel integration, events from a file

1. Synaptic (springmass) channel integration, smaller time step

Startup command : tests/code/springmass1

(No model has been loaded for the following set of commands.)

1.1. Is a synaptic (springmass) channel integrated correctly, smaller time step ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-05)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (2.12425)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.14171)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Final Iteration
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.02)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 1 3.40282e+38 -1 0 0							 -1 5.13741e-18 5.27622e-11
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (-0.0791695)
VM Axial Resistances (pdResults[1]) : (2.12425)
VM Axial Resistances (pdResults[2]) : (-0.0791696)
VM Axial Resistances (pdResults[3]) : (1.14171)
VM Membrane Potentials (pdVms[0]) : (-0.0791697)
VM Membrane Potentials (pdVms[1]) : (-0.0791698)
1e-05 -0.08
2e-05 -0.08
3e-05 -0.08
4e-05 -0.08
5e-05 -0.08
6e-05 -0.08
7e-05 -0.08
8e-05 -0.08
9e-05 -0.08
0.0001 -0.08
0.00011 -0.0799998
0.00012 -0.0799992
0.00013 -0.0799982
0.00014 -0.0799969
0.00015 -0.0799952
0.00016 -0.0799932
0.00017 -0.0799908
0.00018 -0.0799881
0.00019 -0.0799852
0.0002 -0.0799819
0.00021 -0.0799783
0.00022 -0.0799745
0.00023 -0.0799704
0.00024 -0.079966
0.00025 -0.0799614
0.00026 -0.0799565
0.00027 -0.0799514
0.00028 -0.0799461
0.00029 -0.0799405
0.0003 -0.0799348
0.00031 -0.0799288
0.00032 -0.0799226
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0.00034 -0.0799096
0.00035 -0.0799029
0.00036 -0.079896
0.00037 -0.0798889
0.00038 -0.0798816
0.00039 -0.0798742
0.0004 -0.0798667
0.00041 -0.079859
0.00042 -0.0798511
0.00043 -0.0798431
0.00044 -0.079835
0.00045 -0.0798268
0.00046 -0.0798185
0.00047 -0.07981
0.00048 -0.0798014
0.00049 -0.0797928
0.0005 -0.079784
0.00051 -0.0797751
0.00052 -0.0797662
0.00053 -0.0797572
0.00054 -0.079748
0.00055 -0.0797388
0.00056 -0.0797296
0.00057 -0.0797202
0.00058 -0.0797108
0.00059 -0.0797014
0.0006 -0.0796918
0.00061 -0.0796823
0.00062 -0.0796726
0.00063 -0.0796629
0.00064 -0.0796532
0.00065 -0.0796434
0.00066 -0.0796336
0.00067 -0.0796238
0.00068 -0.0796139
0.00069 -0.079604
0.0007 -0.0795941
0.00071 -0.0795841
0.00072 -0.0795741
0.00073 -0.0795641
0.00074 -0.0795541
0.00075 -0.0795441
0.00076 -0.079534
0.00077 -0.079524
0.00078 -0.0795139
0.00079 -0.0795038
0.0008 -0.0794937
0.00081 -0.0794837
0.00082 -0.0794736
0.00083 -0.0794635
0.00084 -0.0794534
0.00085 -0.0794433
0.00086 -0.0794333
0.00087 -0.0794232
0.00088 -0.0794132
0.00089 -0.0794031
0.0009 -0.0793931
0.00091 -0.0793831
0.00092 -0.0793731
0.00093 -0.0793632
0.00094 -0.0793532
0.00095 -0.0793433
0.00096 -0.0793334
0.00097 -0.0793235
0.00098 -0.0793136
0.00099 -0.0793038
0.001 -0.079294
0.00101 -0.0792842
0.00102 -0.0792745
0.00103 -0.0792647
0.00104 -0.0792551
0.00105 -0.0792454
0.00106 -0.0792358
0.00107 -0.0792262
0.00108 -0.0792166
0.00109 -0.0792071
0.0011 -0.0791976
0.00111 -0.0791882
0.00112 -0.0791788
0.00113 -0.0791694
0.00114 -0.0791601
0.00115 -0.0791508
0.00116 -0.0791415
0.00117 -0.0791323
0.00118 -0.0791231
0.00119 -0.079114
0.0012 -0.0791049
0.00121 -0.0790959
0.00122 -0.0790869
0.00123 -0.0790779
0.00124 -0.079069
0.00125 -0.0790601
0.00126 -0.0790513
0.00127 -0.0790425
0.00128 -0.0790338
0.00129 -0.0790251
0.0013 -0.0790165
0.00131 -0.0790079
0.00132 -0.0789994
0.00133 -0.0789909
0.00134 -0.0789824
0.00135 -0.078974
0.00136 -0.0789657
0.00137 -0.0789574
0.00138 -0.0789492
0.00139 -0.078941
0.0014 -0.0789328
0.00141 -0.0789247
0.00142 -0.0789167
0.00143 -0.0789087
0.00144 -0.0789007
0.00145 -0.0788928
0.00146 -0.078885
0.00147 -0.0788772
0.00148 -0.0788694
0.00149 -0.0788617
0.0015 -0.0788541
0.00151 -0.0788465
0.00152 -0.0788389
0.00153 -0.0788314
0.00154 -0.078824
0.00155 -0.0788166
0.00156 -0.0788092
0.00157 -0.0788019
0.00158 -0.0787947
0.00159 -0.0787875
0.0016 -0.0787804
0.00161 -0.0787733
0.00162 -0.0787662
0.00163 -0.0787593
0.00164 -0.0787523
0.00165 -0.0787454
0.00166 -0.0787386
0.00167 -0.0787318
0.00168 -0.0787251
0.00169 -0.0787184
0.0017 -0.0787117
0.00171 -0.0787052
0.00172 -0.0786986
0.00173 -0.0786921
0.00174 -0.0786857
0.00175 -0.0786793
0.00176 -0.078673
0.00177 -0.0786667
0.00178 -0.0786604
0.00179 -0.0786542
0.0018 -0.0786481
0.00181 -0.078642
0.00182 -0.0786359
0.00183 -0.0786299
0.00184 -0.078624
0.00185 -0.0786181
0.00186 -0.0786122
0.00187 -0.0786064
0.00188 -0.0786007
0.00189 -0.078595
0.0019 -0.0785893
0.00191 -0.0785837
0.00192 -0.0785781
0.00193 -0.0785726
0.00194 -0.0785671
0.00195 -0.0785617
0.00196 -0.0785563
0.00197 -0.0785509
0.00198 -0.0785456
0.00199 -0.0785404
0.002 -0.0785352
0.00201 -0.07853
0.00202 -0.0785249
0.00203 -0.0785198
0.00204 -0.0785148
0.00205 -0.0785098
0.00206 -0.0785049
0.00207 -0.0785
0.00208 -0.0784951
0.00209 -0.0784903
0.0021 -0.0784855
0.00211 -0.0784808
0.00212 -0.0784761
0.00213 -0.0784715
0.00214 -0.0784669
0.00215 -0.0784623
0.00216 -0.0784578
0.00217 -0.0784533
0.00218 -0.0784489
0.00219 -0.0784445
0.0022 -0.0784402
0.00221 -0.0784358
0.00222 -0.0784316
0.00223 -0.0784273
0.00224 -0.0784232
0.00225 -0.078419
0.00226 -0.0784149
0.00227 -0.0784108
0.00228 -0.0784068
0.00229 -0.0784028
0.0023 -0.0783988
0.00231 -0.0783949
0.00232 -0.078391
0.00233 -0.0783872
0.00234 -0.0783834
0.00235 -0.0783796
0.00236 -0.0783759
0.00237 -0.0783722
0.00238 -0.0783685
0.00239 -0.0783649
0.0024 -0.0783613
0.00241 -0.0783578
0.00242 -0.0783542
0.00243 -0.0783508
0.00244 -0.0783473
0.00245 -0.0783439
0.00246 -0.0783405
0.00247 -0.0783372
0.00248 -0.0783339
0.00249 -0.0783306
0.0025 -0.0783274
0.00251 -0.0783242
0.00252 -0.078321
0.00253 -0.0783179
0.00254 -0.0783147
0.00255 -0.0783117
0.00256 -0.0783086
0.00257 -0.0783056
0.00258 -0.0783027
0.00259 -0.0782997
0.0026 -0.0782968
0.00261 -0.0782939
0.00262 -0.0782911
0.00263 -0.0782882
0.00264 -0.0782855
0.00265 -0.0782827
0.00266 -0.07828
0.00267 -0.0782773
0.00268 -0.0782746
0.00269 -0.078272
0.0027 -0.0782693
0.00271 -0.0782668
0.00272 -0.0782642
0.00273 -0.0782617
0.00274 -0.0782592
0.00275 -0.0782567
0.00276 -0.0782543
0.00277 -0.0782519
0.00278 -0.0782495
0.00279 -0.0782472
0.0028 -0.0782448
0.00281 -0.0782425
0.00282 -0.0782403
0.00283 -0.078238
0.00284 -0.0782358
0.00285 -0.0782336
0.00286 -0.0782314
0.00287 -0.0782293
0.00288 -0.0782272
0.00289 -0.0782251
0.0029 -0.078223
0.00291 -0.078221
0.00292 -0.078219
0.00293 -0.078217
0.00294 -0.078215
0.00295 -0.0782131
0.00296 -0.0782112
0.00297 -0.0782093
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0.00299 -0.0782056
0.003 -0.0782038
0.00301 -0.078202
0.00302 -0.0782002
0.00303 -0.0781984
0.00304 -0.0781967
0.00305 -0.078195
0.00306 -0.0781933
0.00307 -0.0781917
0.00308 -0.07819
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0.0031 -0.0781868
0.00311 -0.0781853
0.00312 -0.0781837
0.00313 -0.0781822
0.00314 -0.0781807
0.00315 -0.0781792
0.00316 -0.0781777
0.00317 -0.0781763
0.00318 -0.0781749
0.00319 -0.0781735
0.0032 -0.0781721
0.00321 -0.0781707
0.00322 -0.0781694
0.00323 -0.0781681
0.00324 -0.0781667
0.00325 -0.0781655
0.00326 -0.0781642
0.00327 -0.078163
0.00328 -0.0781617
0.00329 -0.0781605
0.0033 -0.0781593
0.00331 -0.0781582
0.00332 -0.078157
0.00333 -0.0781559
0.00334 -0.0781548
0.00335 -0.0781537
0.00336 -0.0781526
0.00337 -0.0781515
0.00338 -0.0781505
0.00339 -0.0781495
0.0034 -0.0781484
0.00341 -0.0781474
0.00342 -0.0781465
0.00343 -0.0781455
0.00344 -0.0781446
0.00345 -0.0781436
0.00346 -0.0781427
0.00347 -0.0781418
0.00348 -0.078141
0.00349 -0.0781401
0.0035 -0.0781393
0.00351 -0.0781384
0.00352 -0.0781376
0.00353 -0.0781368
0.00354 -0.078136
0.00355 -0.0781353
0.00356 -0.0781345
0.00357 -0.0781338
0.00358 -0.0781331
0.00359 -0.0781324
0.0036 -0.0781317
0.00361 -0.078131
0.00362 -0.0781303
0.00363 -0.0781297
0.00364 -0.078129
0.00365 -0.0781284
0.00366 -0.0781278
0.00367 -0.0781272
0.00368 -0.0781266
0.00369 -0.0781261
0.0037 -0.0781255
0.00371 -0.078125
0.00372 -0.0781245
0.00373 -0.0781239
0.00374 -0.0781234
0.00375 -0.078123
0.00376 -0.0781225
0.00377 -0.078122
0.00378 -0.0781216
0.00379 -0.0781211
0.0038 -0.0781207
0.00381 -0.0781203
0.00382 -0.0781199
0.00383 -0.0781195
0.00384 -0.0781191
0.00385 -0.0781188
0.00386 -0.0781184
0.00387 -0.0781181
0.00388 -0.0781178
0.00389 -0.0781175
0.0039 -0.0781171
0.00391 -0.0781169
0.00392 -0.0781166
0.00393 -0.0781163
0.00394 -0.078116
0.00395 -0.0781158
0.00396 -0.0781156
0.00397 -0.0781153
0.00398 -0.0781151
0.00399 -0.0781149
0.004 -0.0781147
0.00401 -0.0781145
0.00402 -0.0781144
0.00403 -0.0781142
0.00404 -0.078114
0.00405 -0.0781139
0.00406 -0.0781138
0.00407 -0.0781136
0.00408 -0.0781135
0.00409 -0.0781134
0.0041 -0.0781133
0.00411 -0.0781132
0.00412 -0.0781132
0.00413 -0.0781131
0.00414 -0.078113
0.00415 -0.078113
0.00416 -0.0781129
0.00417 -0.0781129
0.00418 -0.0781129
0.00419 -0.0781129
0.0042 -0.0781129
0.00421 -0.0781129
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0.01794 -0.0790675
0.01795 -0.079068
0.01796 -0.0790685
0.01797 -0.0790691
0.01798 -0.0790696
0.01799 -0.0790701
0.018 -0.0790706
0.01801 -0.0790712
0.01802 -0.0790717
0.01803 -0.0790722
0.01804 -0.0790727
0.01805 -0.0790733
0.01806 -0.0790738
0.01807 -0.0790743
0.01808 -0.0790748
0.01809 -0.0790754
0.0181 -0.0790759
0.01811 -0.0790764
0.01812 -0.0790769
0.01813 -0.0790774
0.01814 -0.079078
0.01815 -0.0790785
0.01816 -0.079079
0.01817 -0.0790795
0.01818 -0.07908
0.01819 -0.0790806
0.0182 -0.0790811
0.01821 -0.0790816
0.01822 -0.0790821
0.01823 -0.0790826
0.01824 -0.0790831
0.01825 -0.0790837
0.01826 -0.0790842
0.01827 -0.0790847
0.01828 -0.0790852
0.01829 -0.0790857
0.0183 -0.0790862
0.01831 -0.0790868
0.01832 -0.0790873
0.01833 -0.0790878
0.01834 -0.0790883
0.01835 -0.0790888
0.01836 -0.0790893
0.01837 -0.0790899
0.01838 -0.0790904
0.01839 -0.0790909
0.0184 -0.0790914
0.01841 -0.0790919
0.01842 -0.0790924
0.01843 -0.0790929
0.01844 -0.0790934
0.01845 -0.079094
0.01846 -0.0790945
0.01847 -0.079095
0.01848 -0.0790955
0.01849 -0.079096
0.0185 -0.0790965
0.01851 -0.079097
0.01852 -0.0790975
0.01853 -0.079098
0.01854 -0.0790985
0.01855 -0.079099
0.01856 -0.0790996
0.01857 -0.0791001
0.01858 -0.0791006
0.01859 -0.0791011
0.0186 -0.0791016
0.01861 -0.0791021
0.01862 -0.0791026
0.01863 -0.0791031
0.01864 -0.0791036
0.01865 -0.0791041
0.01866 -0.0791046
0.01867 -0.0791051
0.01868 -0.0791056
0.01869 -0.0791061
0.0187 -0.0791066
0.01871 -0.0791071
0.01872 -0.0791077
0.01873 -0.0791082
0.01874 -0.0791087
0.01875 -0.0791092
0.01876 -0.0791097
0.01877 -0.0791102
0.01878 -0.0791107
0.01879 -0.0791112
0.0188 -0.0791117
0.01881 -0.0791122
0.01882 -0.0791127
0.01883 -0.0791132
0.01884 -0.0791137
0.01885 -0.0791142
0.01886 -0.0791147
0.01887 -0.0791152
0.01888 -0.0791157
0.01889 -0.0791162
0.0189 -0.0791167
0.01891 -0.0791172
0.01892 -0.0791177
0.01893 -0.0791182
0.01894 -0.0791187
0.01895 -0.0791192
0.01896 -0.0791197
0.01897 -0.0791202
0.01898 -0.0791206
0.01899 -0.0791211
0.019 -0.0791216
0.01901 -0.0791221
0.01902 -0.0791226
0.01903 -0.0791231
0.01904 -0.0791236
0.01905 -0.0791241
0.01906 -0.0791246
0.01907 -0.0791251
0.01908 -0.0791256
0.01909 -0.0791261
0.0191 -0.0791266
0.01911 -0.0791271
0.01912 -0.0791276
0.01913 -0.0791281
0.01914 -0.0791286
0.01915 -0.079129
0.01916 -0.0791295
0.01917 -0.07913
0.01918 -0.0791305
0.01919 -0.079131
0.0192 -0.0791315
0.01921 -0.079132
0.01922 -0.0791325
0.01923 -0.079133
0.01924 -0.0791335
0.01925 -0.0791339
0.01926 -0.0791344
0.01927 -0.0791349
0.01928 -0.0791354
0.01929 -0.0791359
0.0193 -0.0791364
0.01931 -0.0791369
0.01932 -0.0791374
0.01933 -0.0791378
0.01934 -0.0791383
0.01935 -0.0791388
0.01936 -0.0791393
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0.01938 -0.0791403
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0.0194 -0.0791412
0.01941 -0.0791417
0.01942 -0.0791422
0.01943 -0.0791427
0.01944 -0.0791432
0.01945 -0.0791437
0.01946 -0.0791441
0.01947 -0.0791446
0.01948 -0.0791451
0.01949 -0.0791456
0.0195 -0.0791461
0.01951 -0.0791466
0.01952 -0.079147
0.01953 -0.0791475
0.01954 -0.079148
0.01955 -0.0791485
0.01956 -0.079149
0.01957 -0.0791494
0.01958 -0.0791499
0.01959 -0.0791504
0.0196 -0.0791509
0.01961 -0.0791514
0.01962 -0.0791518
0.01963 -0.0791523
0.01964 -0.0791528
0.01965 -0.0791533
0.01966 -0.0791538
0.01967 -0.0791542
0.01968 -0.0791547
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0.01971 -0.0791561
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0.01973 -0.0791571
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0.01978 -0.0791595
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0.0198 -0.0791604
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0.01986 -0.0791633
0.01987 -0.0791637
0.01988 -0.0791642
0.01989 -0.0791647
0.0199 -0.0791651
0.01991 -0.0791656
0.01992 -0.0791661
0.01993 -0.0791665
0.01994 -0.079167
0.01995 -0.0791675
0.01996 -0.079168
0.01997 -0.0791684
0.01998 -0.0791689
0.01999 -0.0791694
0.02 -0.0791698

2. Synaptic (springmass) channel integration, larger time step

Startup command : tests/code/springmass2

(No model has been loaded for the following set of commands.)

2.1. Is a synaptic (springmass) channel integrated correctly, larger time step ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (2e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Final Iteration
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.02)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 1 3.40282e+38 -1 0 0							 -1 5.08654e-18 5.17196e-11
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.0791857)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.0791858)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (-0.0791861)
VM Membrane Potentials (pdVms[1]) : (-0.0791863)
0 -0.08
1 -0.08
2 -0.08
3 -0.08
4 -0.08
5 -0.0799989
6 -0.0799963
7 -0.0799923
8 -0.0799871
9 -0.0799807
10 -0.0799732
11 -0.0799646
12 -0.079955
13 -0.0799446
14 -0.0799333
15 -0.0799211
16 -0.0799083
17 -0.0798947
18 -0.0798805
19 -0.0798656
20 -0.0798503
21 -0.0798344
22 -0.079818
23 -0.0798012
24 -0.079784
25 -0.0797665
26 -0.0797486
27 -0.0797304
28 -0.079712
29 -0.0796933
30 -0.0796744
31 -0.0796554
32 -0.0796361
33 -0.0796168
34 -0.0795973
35 -0.0795777
36 -0.0795581
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38 -0.0795186
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66 -0.0789984
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71 -0.0789185
72 -0.0789031
73 -0.0788879
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75 -0.0788581
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78 -0.0788149
79 -0.0788009
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82 -0.0787601
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91 -0.0786481
92 -0.0786366
93 -0.0786253
94 -0.0786142
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96 -0.0785925
97 -0.078582
98 -0.0785716
99 -0.0785614
100 -0.0785513
101 -0.0785415
102 -0.0785318
103 -0.0785223
104 -0.0785129
105 -0.0785037
106 -0.0784947
107 -0.0784858
108 -0.0784772
109 -0.0784686
110 -0.0784602
111 -0.078452
112 -0.078444
113 -0.078436
114 -0.0784283
115 -0.0784207
116 -0.0784132
117 -0.0784059
118 -0.0783987
119 -0.0783917
120 -0.0783848
121 -0.078378
122 -0.0783714
123 -0.0783649
124 -0.0783586
125 -0.0783523
126 -0.0783462
127 -0.0783403
128 -0.0783344
129 -0.0783287
130 -0.0783231
131 -0.0783177
132 -0.0783123
133 -0.0783071
134 -0.078302
135 -0.078297
136 -0.0782921
137 -0.0782873
138 -0.0782826
139 -0.078278
140 -0.0782736
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142 -0.078265
143 -0.0782608
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145 -0.0782529
146 -0.078249
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148 -0.0782416
149 -0.078238
150 -0.0782345
151 -0.0782312
152 -0.0782279
153 -0.0782246
154 -0.0782215
155 -0.0782185
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157 -0.0782127
158 -0.0782099
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160 -0.0782045
161 -0.078202
162 -0.0781995
163 -0.0781971
164 -0.0781947
165 -0.0781925
166 -0.0781903
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199 -0.0781515
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240 -0.0781639
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244 -0.0781673
245 -0.0781683
246 -0.0781692
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248 -0.0781711
249 -0.0781721
250 -0.0781731
251 -0.0781741
252 -0.0781751
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260 -0.0781839
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280 -0.0782094
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285 -0.0782164
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287 -0.0782193
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545 -0.0786421
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988 -0.0791761
989 -0.079177
990 -0.079178
991 -0.0791789
992 -0.0791798
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995 -0.0791826
996 -0.0791835
997 -0.0791844
998 -0.0791854
999 -0.0791863

3. Synaptic (springmass) channel integration, endogenous firing

Startup command : tests/code/springmass3

(No model has been loaded for the following set of commands.)

3.1. Is a synaptic (springmass) channel integrated correctly, endogenous firing (works only with the linux rng) ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS -1 (nil) -1 0 0.0007							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-05)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS -1 (nil) -1 0 0.0007							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (2.12425)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.14171)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Final Iteration
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.1)
Heccer (dStep) : (1e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 868760 2.12425
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS -1 (nil) -1 0 0.0007							 -1 9.49308e-23 8.39705e-13
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 109281 1.14171
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (2.12425)
VM Diagonals (pdDiagonals[1]) : (1.14171)
VM Axial Resistances (pdAxres[0]) : (-0.141406)
VM Axial Resistances (pdAxres[1]) : (-1.12415)
VM Axial Resistances (pdAxres[2]) : (-1.12415)
VM Axial Resistances (pdResults[0]) : (-0.0781365)
VM Axial Resistances (pdResults[1]) : (2.12425)
VM Axial Resistances (pdResults[2]) : (-0.0781368)
VM Axial Resistances (pdResults[3]) : (1.14171)
VM Membrane Potentials (pdVms[0]) : (-0.078137)
VM Membrane Potentials (pdVms[1]) : (-0.0781373)
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0.09671 -0.0777573
0.09672 -0.0777585
0.09673 -0.0777598
0.09674 -0.0777611
0.09675 -0.0777623
0.09676 -0.0777636
0.09677 -0.0777648
0.09678 -0.0777661
0.09679 -0.0777674
0.0968 -0.0777686
0.09681 -0.0777699
0.09682 -0.0777711
0.09683 -0.0777724
0.09684 -0.0777737
0.09685 -0.0777749
0.09686 -0.0777762
0.09687 -0.0777774
0.09688 -0.0777787
0.09689 -0.0777799
0.0969 -0.0777812
0.09691 -0.0777824
0.09692 -0.0777837
0.09693 -0.0777849
0.09694 -0.0777862
0.09695 -0.0777874
0.09696 -0.0777887
0.09697 -0.0777899
0.09698 -0.0777912
0.09699 -0.0777924
0.097 -0.0777937
0.09701 -0.0777949
0.09702 -0.0777962
0.09703 -0.0777974
0.09704 -0.0777986
0.09705 -0.0777999
0.09706 -0.0778011
0.09707 -0.0778024
0.09708 -0.0778036
0.09709 -0.0778048
0.0971 -0.0778061
0.09711 -0.0778073
0.09712 -0.0778086
0.09713 -0.0778098
0.09714 -0.077811
0.09715 -0.0778123
0.09716 -0.0778135
0.09717 -0.0778147
0.09718 -0.077816
0.09719 -0.0778172
0.0972 -0.0778184
0.09721 -0.0778197
0.09722 -0.0778209
0.09723 -0.0778221
0.09724 -0.0778233
0.09725 -0.0778246
0.09726 -0.0778258
0.09727 -0.077827
0.09728 -0.0778283
0.09729 -0.0778295
0.0973 -0.0778307
0.09731 -0.0778319
0.09732 -0.0778331
0.09733 -0.0778344
0.09734 -0.0778356
0.09735 -0.0778368
0.09736 -0.077838
0.09737 -0.0778393
0.09738 -0.0778405
0.09739 -0.0778417
0.0974 -0.0778429
0.09741 -0.0778441
0.09742 -0.0778453
0.09743 -0.0778466
0.09744 -0.0778478
0.09745 -0.077849
0.09746 -0.0778502
0.09747 -0.0778514
0.09748 -0.0778526
0.09749 -0.0778538
0.0975 -0.077855
0.09751 -0.0778563
0.09752 -0.0778575
0.09753 -0.0778587
0.09754 -0.0778599
0.09755 -0.0778611
0.09756 -0.0778623
0.09757 -0.0778635
0.09758 -0.0778647
0.09759 -0.0778659
0.0976 -0.0778671
0.09761 -0.0778683
0.09762 -0.0778695
0.09763 -0.0778707
0.09764 -0.0778719
0.09765 -0.0778731
0.09766 -0.0778743
0.09767 -0.0778755
0.09768 -0.0778767
0.09769 -0.0778779
0.0977 -0.0778791
0.09771 -0.0778803
0.09772 -0.0778815
0.09773 -0.0778827
0.09774 -0.0778839
0.09775 -0.0778851
0.09776 -0.0778863
0.09777 -0.0778875
0.09778 -0.0778887
0.09779 -0.0778899
0.0978 -0.0778911
0.09781 -0.0778922
0.09782 -0.0778934
0.09783 -0.0778946
0.09784 -0.0778958
0.09785 -0.077897
0.09786 -0.0778982
0.09787 -0.0778994
0.09788 -0.0779006
0.09789 -0.0779017
0.0979 -0.0779029
0.09791 -0.0779041
0.09792 -0.0779053
0.09793 -0.0779065
0.09794 -0.0779077
0.09795 -0.0779088
0.09796 -0.07791
0.09797 -0.0779112
0.09798 -0.0779124
0.09799 -0.0779135
0.098 -0.0779147
0.09801 -0.0779159
0.09802 -0.0779171
0.09803 -0.0779183
0.09804 -0.0779194
0.09805 -0.0779206
0.09806 -0.0779218
0.09807 -0.0779229
0.09808 -0.0779241
0.09809 -0.0779253
0.0981 -0.0779265
0.09811 -0.0779276
0.09812 -0.0779288
0.09813 -0.07793
0.09814 -0.0779311
0.09815 -0.0779323
0.09816 -0.0779335
0.09817 -0.0779346
0.09818 -0.0779358
0.09819 -0.077937
0.0982 -0.0779381
0.09821 -0.0779393
0.09822 -0.0779405
0.09823 -0.0779416
0.09824 -0.0779428
0.09825 -0.0779439
0.09826 -0.0779451
0.09827 -0.0779463
0.09828 -0.0779474
0.09829 -0.0779486
0.0983 -0.0779497
0.09831 -0.0779509
0.09832 -0.077952
0.09833 -0.0779532
0.09834 -0.0779544
0.09835 -0.0779555
0.09836 -0.0779567
0.09837 -0.0779578
0.09838 -0.077959
0.09839 -0.0779601
0.0984 -0.0779613
0.09841 -0.0779624
0.09842 -0.0779636
0.09843 -0.0779647
0.09844 -0.0779659
0.09845 -0.077967
0.09846 -0.0779682
0.09847 -0.0779693
0.09848 -0.0779705
0.09849 -0.0779716
0.0985 -0.0779727
0.09851 -0.0779739
0.09852 -0.077975
0.09853 -0.0779762
0.09854 -0.0779773
0.09855 -0.0779785
0.09856 -0.0779796
0.09857 -0.0779807
0.09858 -0.0779819
0.09859 -0.077983
0.0986 -0.0779842
0.09861 -0.0779853
0.09862 -0.0779864
0.09863 -0.0779876
0.09864 -0.0779887
0.09865 -0.0779898
0.09866 -0.077991
0.09867 -0.0779921
0.09868 -0.0779932
0.09869 -0.0779944
0.0987 -0.0779955
0.09871 -0.0779966
0.09872 -0.0779978
0.09873 -0.0779989
0.09874 -0.078
0.09875 -0.0780011
0.09876 -0.0780023
0.09877 -0.0780034
0.09878 -0.0780045
0.09879 -0.0780056
0.0988 -0.0780068
0.09881 -0.0780079
0.09882 -0.078009
0.09883 -0.0780101
0.09884 -0.0780113
0.09885 -0.0780124
0.09886 -0.0780135
0.09887 -0.0780146
0.09888 -0.0780158
0.09889 -0.0780169
0.0989 -0.078018
0.09891 -0.0780191
0.09892 -0.0780202
0.09893 -0.0780213
0.09894 -0.0780225
0.09895 -0.0780236
0.09896 -0.0780247
0.09897 -0.0780258
0.09898 -0.0780269
0.09899 -0.078028
0.099 -0.0780291
0.09901 -0.0780303
0.09902 -0.0780314
0.09903 -0.0780325
0.09904 -0.0780336
0.09905 -0.0780347
0.09906 -0.0780358
0.09907 -0.0780369
0.09908 -0.078038
0.09909 -0.0780391
0.0991 -0.0780402
0.09911 -0.0780413
0.09912 -0.0780424
0.09913 -0.0780436
0.09914 -0.0780447
0.09915 -0.0780458
0.09916 -0.0780469
0.09917 -0.078048
0.09918 -0.0780491
0.09919 -0.0780502
0.0992 -0.0780513
0.09921 -0.0780524
0.09922 -0.0780535
0.09923 -0.0780546
0.09924 -0.0780557
0.09925 -0.0780568
0.09926 -0.0780579
0.09927 -0.0780589
0.09928 -0.07806
0.09929 -0.0780611
0.0993 -0.0780622
0.09931 -0.0780633
0.09932 -0.0780644
0.09933 -0.0780655
0.09934 -0.0780666
0.09935 -0.0780677
0.09936 -0.0780688
0.09937 -0.0780699
0.09938 -0.078071
0.09939 -0.078072
0.0994 -0.0780731
0.09941 -0.0780742
0.09942 -0.0780753
0.09943 -0.0780764
0.09944 -0.0780775
0.09945 -0.0780786
0.09946 -0.0780796
0.09947 -0.0780807
0.09948 -0.0780818
0.09949 -0.0780829
0.0995 -0.078084
0.09951 -0.0780851
0.09952 -0.0780861
0.09953 -0.0780872
0.09954 -0.0780883
0.09955 -0.0780894
0.09956 -0.0780905
0.09957 -0.0780915
0.09958 -0.0780926
0.09959 -0.0780937
0.0996 -0.0780948
0.09961 -0.0780958
0.09962 -0.0780969
0.09963 -0.078098
0.09964 -0.0780991
0.09965 -0.0781001
0.09966 -0.0781012
0.09967 -0.0781023
0.09968 -0.0781033
0.09969 -0.0781044
0.0997 -0.0781055
0.09971 -0.0781066
0.09972 -0.0781076
0.09973 -0.0781087
0.09974 -0.0781098
0.09975 -0.0781108
0.09976 -0.0781119
0.09977 -0.078113
0.09978 -0.078114
0.09979 -0.0781151
0.0998 -0.0781161
0.09981 -0.0781172
0.09982 -0.0781183
0.09983 -0.0781193
0.09984 -0.0781204
0.09985 -0.0781215
0.09986 -0.0781225
0.09987 -0.0781236
0.09988 -0.0781246
0.09989 -0.0781257
0.0999 -0.0781267
0.09991 -0.0781278
0.09992 -0.0781289
0.09993 -0.0781299
0.09994 -0.078131
0.09995 -0.078132
0.09996 -0.0781331
0.09997 -0.0781341
0.09998 -0.0781352
0.09999 -0.0781362
0.1 -0.0781373

4. Synaptic (springmass) channel integration, events from a file

Startup command : /bin/sh -c cd tests && ./code/springmass4


4.1. Is a synaptic (springmass) channel integrated correctly, larger time step, events from a file ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (2e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 0 0.0001 -1 0 0							 -1 0 0
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
Final Iteration
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.02)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (2)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
Compartment (mc.iType) : (1)
Compartment (iParent) : (0)
Compartment (dCm) : (5.75533e-12)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.08)
Compartment (dInject) : (0)
Compartment (dRa) : (772813)
Compartment (dRm) : (8.5486e+09)
MinimumDegree (iEntries) : (2)
MinimumDegree (piChildren[0]) : (1)
MinimumDegree (piChildren[0][0]) : (1)
MinimumDegree (piChildren[1]) : (0)
MinimumDegree (piForward[0]) : (1)
MinimumDegree (piForward[1]) : (0)
MinimumDegree (piBackward[0]) : (1)
MinimumDegree (piBackward[1]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0 2.5681e-06
00002 :: SPRINGMASS 1 3.40282e+38 -1 0 0							 -1 5.08654e-18 5.17196e-11
00003 :: UPDATECOMPARTMENTCURRENT
00004 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00005 :: FINISH
VM Diagonals (pdDiagonals[0]) : (3.24851)
VM Diagonals (pdDiagonals[1]) : (1.28342)
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.0791857)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.0791858)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (-0.0791861)
VM Membrane Potentials (pdVms[1]) : (-0.0791863)
0 -0.08
1 -0.08
2 -0.08
3 -0.08
4 -0.08
5 -0.0799989
6 -0.0799963
7 -0.0799923
8 -0.0799871
9 -0.0799807
10 -0.0799732
11 -0.0799646
12 -0.079955
13 -0.0799446
14 -0.0799333
15 -0.0799211
16 -0.0799083
17 -0.0798947
18 -0.0798805
19 -0.0798656
20 -0.0798503
21 -0.0798344
22 -0.079818
23 -0.0798012
24 -0.079784
25 -0.0797665
26 -0.0797486
27 -0.0797304
28 -0.079712
29 -0.0796933
30 -0.0796744
31 -0.0796554
32 -0.0796361
33 -0.0796168
34 -0.0795973
35 -0.0795777
36 -0.0795581
37 -0.0795384
38 -0.0795186
39 -0.0794989
40 -0.0794791
41 -0.0794593
42 -0.0794396
43 -0.0794199
44 -0.0794003
45 -0.0793807
46 -0.0793612
47 -0.0793417
48 -0.0793224
49 -0.0793032
50 -0.0792841
51 -0.0792651
52 -0.0792462
53 -0.0792274
54 -0.0792088
55 -0.0791904
56 -0.0791721
57 -0.0791539
58 -0.079136
59 -0.0791181
60 -0.0791005
61 -0.079083
62 -0.0790657
63 -0.0790486
64 -0.0790317
65 -0.0790149
66 -0.0789984
67 -0.078982
68 -0.0789658
69 -0.0789499
70 -0.0789341
71 -0.0789185
72 -0.0789031
73 -0.0788879
74 -0.0788729
75 -0.0788581
76 -0.0788435
77 -0.0788291
78 -0.0788149
79 -0.0788009
80 -0.0787871
81 -0.0787735
82 -0.0787601
83 -0.0787468
84 -0.0787338
85 -0.078721
86 -0.0787084
87 -0.0786959
88 -0.0786837
89 -0.0786717
90 -0.0786598
91 -0.0786481
92 -0.0786366
93 -0.0786253
94 -0.0786142
95 -0.0786033
96 -0.0785925
97 -0.078582
98 -0.0785716
99 -0.0785614
100 -0.0785513
101 -0.0785415
102 -0.0785318
103 -0.0785223
104 -0.0785129
105 -0.0785037
106 -0.0784947
107 -0.0784858
108 -0.0784772
109 -0.0784686
110 -0.0784602
111 -0.078452
112 -0.078444
113 -0.078436
114 -0.0784283
115 -0.0784207
116 -0.0784132
117 -0.0784059
118 -0.0783987
119 -0.0783917
120 -0.0783848
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