Index of group ./specifications/serialization


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serialization

1. Single compartment passive model serialization
2. Double compartment passive model serialization
3. Triplet passive compartment serialization.
4. Fork3p fork of three passive compartments.
5. Fork4p1 fork of four passive compartments, first alternative.
6. Fork4p2 fork of four passive compartments, second alternative.
7. Fork4p3 fork of four passive compartments, third alternative.
8. C1c2p1 two passive compartments with injected current
9. C1c2p2 two passive compartments with asymetric properties and injected current
10. Tensizesp ten passive compartments with different properties and injected current
11. A single compartment with a naf conductance
12. Two compartments with two pools
13. Compartment with a pool with a feedback loop, reversed order
14. Compartment with a pool with a feedback loop, reversed order
15. Single compartment passive model serialization
16. Single compartment passive model serialization

1. Single compartment passive model serialization

Startup command : tests/code/serialization-singlep

(No model has been loaded for the following set of commands.)

1.1. Can we serialize a single compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)

2. Double compartment passive model serialization

Startup command : tests/code/serialization-doublep

(No model has been loaded for the following set of commands.)

2.1. Can we serialize a double compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)

3. Triplet passive compartment serialization.

Startup command : tests/code/serialization-triplep

(No model has been loaded for the following set of commands.)

3.1. Can we serialize a triplep compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    2
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)

4. Fork3p fork of three passive compartments.

Startup command : tests/code/serialization-fork3p

(No model has been loaded for the following set of commands.)

4.1. Can we serialize a fork3p compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: FORWARD_ELIMINATION    0
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    4
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: FORWARD_ELIMINATION    0
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    4
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: FORWARD_ELIMINATION    0
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    4
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: FORWARD_ELIMINATION    0
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    4
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: FORWARD_ELIMINATION    0
00003 :: FINISH
00004 :: BACKWARD_SUBSTITUTION    4
00005 :: FINISH_ROW
00006 :: BACKWARD_SUBSTITUTION    4
00007 :: FINISH_ROW
00008 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)

5. Fork4p1 fork of four passive compartments, first alternative.

Startup command : tests/code/serialization-fork4p1

(No model has been loaded for the following set of commands.)

5.1. Can we serialize a fork4p1 compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: SET_DIAGONAL
00003 :: FORWARD_ELIMINATION    4
00004 :: FORWARD_ELIMINATION    0
00005 :: FINISH
00006 :: BACKWARD_SUBSTITUTION    6
00007 :: FINISH_ROW
00008 :: BACKWARD_SUBSTITUTION    4
00009 :: FINISH_ROW
00010 :: BACKWARD_SUBSTITUTION    6
00011 :: FINISH_ROW
00012 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: SET_DIAGONAL
00003 :: FORWARD_ELIMINATION    4
00004 :: FORWARD_ELIMINATION    0
00005 :: FINISH
00006 :: BACKWARD_SUBSTITUTION    6
00007 :: FINISH_ROW
00008 :: BACKWARD_SUBSTITUTION    4
00009 :: FINISH_ROW
00010 :: BACKWARD_SUBSTITUTION    6
00011 :: FINISH_ROW
00012 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: SET_DIAGONAL
00003 :: FORWARD_ELIMINATION    4
00004 :: FORWARD_ELIMINATION    0
00005 :: FINISH
00006 :: BACKWARD_SUBSTITUTION    6
00007 :: FINISH_ROW
00008 :: BACKWARD_SUBSTITUTION    4
00009 :: FINISH_ROW
00010 :: BACKWARD_SUBSTITUTION    6
00011 :: FINISH_ROW
00012 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: SET_DIAGONAL
00003 :: FORWARD_ELIMINATION    4
00004 :: FORWARD_ELIMINATION    0
00005 :: FINISH
00006 :: BACKWARD_SUBSTITUTION    6
00007 :: FINISH_ROW
00008 :: BACKWARD_SUBSTITUTION    4
00009 :: FINISH_ROW
00010 :: BACKWARD_SUBSTITUTION    6
00011 :: FINISH_ROW
00012 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.98441)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: SET_DIAGONAL
00001 :: FORWARD_ELIMINATION    2
00002 :: SET_DIAGONAL
00003 :: FORWARD_ELIMINATION    4
00004 :: FORWARD_ELIMINATION    0
00005 :: FINISH
00006 :: BACKWARD_SUBSTITUTION    6
00007 :: FINISH_ROW
00008 :: BACKWARD_SUBSTITUTION    4
00009 :: FINISH_ROW
00010 :: BACKWARD_SUBSTITUTION    6
00011 :: FINISH_ROW
00012 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.98441)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)

6. Fork4p2 fork of four passive compartments, second alternative.

Startup command : tests/code/serialization-fork4p2

(No model has been loaded for the following set of commands.)

6.1. Can we serialize a fork4p2 compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: NEXT_ROW
00002 :: FORWARD_ELIMINATION    4
00003 :: FORWARD_ELIMINATION    2
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    2
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: NEXT_ROW
00002 :: FORWARD_ELIMINATION    4
00003 :: FORWARD_ELIMINATION    2
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    2
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: NEXT_ROW
00002 :: FORWARD_ELIMINATION    4
00003 :: FORWARD_ELIMINATION    2
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    2
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: NEXT_ROW
00002 :: FORWARD_ELIMINATION    4
00003 :: FORWARD_ELIMINATION    2
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    2
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: NEXT_ROW
00002 :: FORWARD_ELIMINATION    4
00003 :: FORWARD_ELIMINATION    2
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    2
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.21315
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.98441)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.21315)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)

7. Fork4p3 fork of four passive compartments, third alternative.

Startup command : tests/code/serialization-fork4p3

(No model has been loaded for the following set of commands.)

7.1. Can we serialize a fork4p3 compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: NEXT_ROW
00001 :: FORWARD_ELIMINATION    4
00002 :: FORWARD_ELIMINATION    2
00003 :: FORWARD_ELIMINATION    0
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    6
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.81942
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: NEXT_ROW
00001 :: FORWARD_ELIMINATION    4
00002 :: FORWARD_ELIMINATION    2
00003 :: FORWARD_ELIMINATION    0
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    6
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.81942
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: NEXT_ROW
00001 :: FORWARD_ELIMINATION    4
00002 :: FORWARD_ELIMINATION    2
00003 :: FORWARD_ELIMINATION    0
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    6
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.81942
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: NEXT_ROW
00001 :: FORWARD_ELIMINATION    4
00002 :: FORWARD_ELIMINATION    2
00003 :: FORWARD_ELIMINATION    0
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    6
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.81942
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.81942)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: NEXT_ROW
00001 :: FORWARD_ELIMINATION    4
00002 :: FORWARD_ELIMINATION    2
00003 :: FORWARD_ELIMINATION    0
00004 :: FINISH
00005 :: BACKWARD_SUBSTITUTION    6
00006 :: FINISH_ROW
00007 :: BACKWARD_SUBSTITUTION    6
00008 :: FINISH_ROW
00009 :: BACKWARD_SUBSTITUTION    6
00010 :: FINISH_ROW
00011 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00002 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00003 :: COMPARTMENT							 -2.23189e-10 0 218562 2.81942
00004 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdAxres[3]) : (-0.60627)
VM Axial Resistances (pdAxres[4]) : (-0.60627)
VM Axial Resistances (pdAxres[5]) : (-0.60627)
VM Axial Resistances (pdAxres[6]) : (-0.60627)
VM Axial Resistances (pdAxres[7]) : (-0.60627)
VM Axial Resistances (pdAxres[8]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (-0.08)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (-0.08)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Axial Resistances (pdResults[4]) : (-0.08)
VM Axial Resistances (pdResults[5]) : (1.60688)
VM Axial Resistances (pdResults[6]) : (-0.08)
VM Axial Resistances (pdResults[7]) : (2.81942)
VM Membrane Potentials (pdVms[0]) : (-0.08)
VM Membrane Potentials (pdVms[1]) : (-0.08)
VM Membrane Potentials (pdVms[2]) : (-0.08)
VM Membrane Potentials (pdVms[3]) : (-0.08)

8. C1c2p1 two passive compartments with injected current

Startup command : tests/code/serialization-c1c2p1

(No model has been loaded for the following set of commands.)

8.1. Can we serialize a c1c2p1 compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (1.7113)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (1.71311)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (1.7113)
VM Membrane Potentials (pdVms[1]) : (1.71311)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.60688
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.60688
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.60627)
VM Axial Resistances (pdAxres[1]) : (-0.60627)
VM Axial Resistances (pdAxres[2]) : (-0.60627)
VM Axial Resistances (pdResults[0]) : (1.7113)
VM Axial Resistances (pdResults[1]) : (1.60688)
VM Axial Resistances (pdResults[2]) : (1.71311)
VM Axial Resistances (pdResults[3]) : (1.60688)
VM Membrane Potentials (pdVms[0]) : (1.7113)
VM Membrane Potentials (pdVms[1]) : (1.71311)

9. C1c2p2 two passive compartments with asymetric properties and injected current

Startup command : tests/code/serialization-c1c2p2

(No model has been loaded for the following set of commands.)

9.1. Can we serialize a c1c2p2 compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (3.35987)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (3.36018)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (3.35987)
VM Membrane Potentials (pdVms[1]) : (3.36018)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00002 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (3.35987)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (3.36018)
VM Axial Resistances (pdResults[3]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (3.35987)
VM Membrane Potentials (pdVms[1]) : (3.36018)

10. Tensizesp ten passive compartments with different properties and injected current

Startup command : tests/code/serialization-tensizesp

(No model has been loaded for the following set of commands.)

10.1. Can we serialize a tensizesp compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: FINISH
00018 :: BACKWARD_SUBSTITUTION   18
00019 :: FINISH_ROW
00020 :: BACKWARD_SUBSTITUTION   16
00021 :: FINISH_ROW
00022 :: BACKWARD_SUBSTITUTION   14
00023 :: FINISH_ROW
00024 :: BACKWARD_SUBSTITUTION   12
00025 :: FINISH_ROW
00026 :: BACKWARD_SUBSTITUTION   10
00027 :: FINISH_ROW
00028 :: BACKWARD_SUBSTITUTION    8
00029 :: FINISH_ROW
00030 :: BACKWARD_SUBSTITUTION    6
00031 :: FINISH_ROW
00032 :: BACKWARD_SUBSTITUTION    4
00033 :: FINISH_ROW
00034 :: BACKWARD_SUBSTITUTION    2
00035 :: FINISH_ROW
00036 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -8.20896e-12 0 1.98078e+06 4.81827
00001 :: COMPARTMENT							 -5.48125e-12 0 2.96651e+06 13.426
00002 :: COMPARTMENT							 -2.85213e-12 0 5.70106e+06 47.4699
00003 :: COMPARTMENT							 -3.64139e-12 0 4.46537e+06 46.7046
00004 :: COMPARTMENT							 -6.20396e-12 0 2.62093e+06 20.2012
00005 :: COMPARTMENT							 -3.03544e-12 0 5.35677e+06 53.3701
00006 :: COMPARTMENT							 -4.95637e-12 0 3.28066e+06 33.9933
00007 :: COMPARTMENT							 -1.61832e-11 0 1.00476e+06 5.18436
00008 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 4.81797
00009 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00010 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-5.71812)
VM Axial Resistances (pdAxres[1]) : (-3.81807)
VM Axial Resistances (pdAxres[2]) : (-12.8909)
VM Axial Resistances (pdAxres[3]) : (-6.7077)
VM Axial Resistances (pdAxres[4]) : (-26.3007)
VM Axial Resistances (pdAxres[5]) : (-33.5787)
VM Axial Resistances (pdAxres[6]) : (-11.389)
VM Axial Resistances (pdAxres[7]) : (-19.4038)
VM Axial Resistances (pdAxres[8]) : (-15.9664)
VM Axial Resistances (pdAxres[9]) : (-7.81198)
VM Axial Resistances (pdAxres[10]) : (-22.2946)
VM Axial Resistances (pdAxres[11]) : (-36.4034)
VM Axial Resistances (pdAxres[12]) : (-3.27659)
VM Axial Resistances (pdAxres[13]) : (-10.6985)
VM Axial Resistances (pdAxres[14]) : (-1.56946)
VM Axial Resistances (pdAxres[15]) : (-0.90757)
VM Axial Resistances (pdAxres[16]) : (-0.282813)
VM Axial Resistances (pdAxres[17]) : (-2.2483)
VM Axial Resistances (pdAxres[18]) : (-2.2483)
VM Axial Resistances (pdAxres[19]) : (-0.90757)
VM Axial Resistances (pdAxres[20]) : (-10.6985)
VM Axial Resistances (pdAxres[21]) : (-36.4034)
VM Axial Resistances (pdAxres[22]) : (-7.81198)
VM Axial Resistances (pdAxres[23]) : (-19.4038)
VM Axial Resistances (pdAxres[24]) : (-33.5787)
VM Axial Resistances (pdAxres[25]) : (-6.7077)
VM Axial Resistances (pdAxres[26]) : (-3.81807)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Axial Resistances (pdResults[8]) : (0)
VM Axial Resistances (pdResults[9]) : (0)
VM Axial Resistances (pdResults[10]) : (0)
VM Axial Resistances (pdResults[11]) : (0)
VM Axial Resistances (pdResults[12]) : (0)
VM Axial Resistances (pdResults[13]) : (0)
VM Axial Resistances (pdResults[14]) : (0)
VM Axial Resistances (pdResults[15]) : (0)
VM Axial Resistances (pdResults[16]) : (0)
VM Axial Resistances (pdResults[17]) : (0)
VM Axial Resistances (pdResults[18]) : (0)
VM Axial Resistances (pdResults[19]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
VM Membrane Potentials (pdVms[4]) : (-0.068)
VM Membrane Potentials (pdVms[5]) : (-0.068)
VM Membrane Potentials (pdVms[6]) : (-0.068)
VM Membrane Potentials (pdVms[7]) : (-0.068)
VM Membrane Potentials (pdVms[8]) : (-0.068)
VM Membrane Potentials (pdVms[9]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: FINISH
00018 :: BACKWARD_SUBSTITUTION   18
00019 :: FINISH_ROW
00020 :: BACKWARD_SUBSTITUTION   16
00021 :: FINISH_ROW
00022 :: BACKWARD_SUBSTITUTION   14
00023 :: FINISH_ROW
00024 :: BACKWARD_SUBSTITUTION   12
00025 :: FINISH_ROW
00026 :: BACKWARD_SUBSTITUTION   10
00027 :: FINISH_ROW
00028 :: BACKWARD_SUBSTITUTION    8
00029 :: FINISH_ROW
00030 :: BACKWARD_SUBSTITUTION    6
00031 :: FINISH_ROW
00032 :: BACKWARD_SUBSTITUTION    4
00033 :: FINISH_ROW
00034 :: BACKWARD_SUBSTITUTION    2
00035 :: FINISH_ROW
00036 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -8.20896e-12 0 1.98078e+06 4.81827
00001 :: COMPARTMENT							 -5.48125e-12 0 2.96651e+06 13.426
00002 :: COMPARTMENT							 -2.85213e-12 0 5.70106e+06 47.4699
00003 :: COMPARTMENT							 -3.64139e-12 0 4.46537e+06 46.7046
00004 :: COMPARTMENT							 -6.20396e-12 0 2.62093e+06 20.2012
00005 :: COMPARTMENT							 -3.03544e-12 0 5.35677e+06 53.3701
00006 :: COMPARTMENT							 -4.95637e-12 0 3.28066e+06 33.9933
00007 :: COMPARTMENT							 -1.61832e-11 0 1.00476e+06 5.18436
00008 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 4.81797
00009 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00010 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-5.71812)
VM Axial Resistances (pdAxres[1]) : (-3.81807)
VM Axial Resistances (pdAxres[2]) : (-12.8909)
VM Axial Resistances (pdAxres[3]) : (-6.7077)
VM Axial Resistances (pdAxres[4]) : (-26.3007)
VM Axial Resistances (pdAxres[5]) : (-33.5787)
VM Axial Resistances (pdAxres[6]) : (-11.389)
VM Axial Resistances (pdAxres[7]) : (-19.4038)
VM Axial Resistances (pdAxres[8]) : (-15.9664)
VM Axial Resistances (pdAxres[9]) : (-7.81198)
VM Axial Resistances (pdAxres[10]) : (-22.2946)
VM Axial Resistances (pdAxres[11]) : (-36.4034)
VM Axial Resistances (pdAxres[12]) : (-3.27659)
VM Axial Resistances (pdAxres[13]) : (-10.6985)
VM Axial Resistances (pdAxres[14]) : (-1.56946)
VM Axial Resistances (pdAxres[15]) : (-0.90757)
VM Axial Resistances (pdAxres[16]) : (-0.282813)
VM Axial Resistances (pdAxres[17]) : (-2.2483)
VM Axial Resistances (pdAxres[18]) : (-2.2483)
VM Axial Resistances (pdAxres[19]) : (-0.90757)
VM Axial Resistances (pdAxres[20]) : (-10.6985)
VM Axial Resistances (pdAxres[21]) : (-36.4034)
VM Axial Resistances (pdAxres[22]) : (-7.81198)
VM Axial Resistances (pdAxres[23]) : (-19.4038)
VM Axial Resistances (pdAxres[24]) : (-33.5787)
VM Axial Resistances (pdAxres[25]) : (-6.7077)
VM Axial Resistances (pdAxres[26]) : (-3.81807)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Axial Resistances (pdResults[8]) : (0)
VM Axial Resistances (pdResults[9]) : (0)
VM Axial Resistances (pdResults[10]) : (0)
VM Axial Resistances (pdResults[11]) : (0)
VM Axial Resistances (pdResults[12]) : (0)
VM Axial Resistances (pdResults[13]) : (0)
VM Axial Resistances (pdResults[14]) : (0)
VM Axial Resistances (pdResults[15]) : (0)
VM Axial Resistances (pdResults[16]) : (0)
VM Axial Resistances (pdResults[17]) : (0)
VM Axial Resistances (pdResults[18]) : (0)
VM Axial Resistances (pdResults[19]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
VM Membrane Potentials (pdVms[4]) : (-0.068)
VM Membrane Potentials (pdVms[5]) : (-0.068)
VM Membrane Potentials (pdVms[6]) : (-0.068)
VM Membrane Potentials (pdVms[7]) : (-0.068)
VM Membrane Potentials (pdVms[8]) : (-0.068)
VM Membrane Potentials (pdVms[9]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: FINISH
00018 :: BACKWARD_SUBSTITUTION   18
00019 :: FINISH_ROW
00020 :: BACKWARD_SUBSTITUTION   16
00021 :: FINISH_ROW
00022 :: BACKWARD_SUBSTITUTION   14
00023 :: FINISH_ROW
00024 :: BACKWARD_SUBSTITUTION   12
00025 :: FINISH_ROW
00026 :: BACKWARD_SUBSTITUTION   10
00027 :: FINISH_ROW
00028 :: BACKWARD_SUBSTITUTION    8
00029 :: FINISH_ROW
00030 :: BACKWARD_SUBSTITUTION    6
00031 :: FINISH_ROW
00032 :: BACKWARD_SUBSTITUTION    4
00033 :: FINISH_ROW
00034 :: BACKWARD_SUBSTITUTION    2
00035 :: FINISH_ROW
00036 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -8.20896e-12 0 1.98078e+06 4.81827
00001 :: COMPARTMENT							 -5.48125e-12 0 2.96651e+06 13.426
00002 :: COMPARTMENT							 -2.85213e-12 0 5.70106e+06 47.4699
00003 :: COMPARTMENT							 -3.64139e-12 0 4.46537e+06 46.7046
00004 :: COMPARTMENT							 -6.20396e-12 0 2.62093e+06 20.2012
00005 :: COMPARTMENT							 -3.03544e-12 0 5.35677e+06 53.3701
00006 :: COMPARTMENT							 -4.95637e-12 0 3.28066e+06 33.9933
00007 :: COMPARTMENT							 -1.61832e-11 0 1.00476e+06 5.18436
00008 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 4.81797
00009 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00010 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-5.71812)
VM Axial Resistances (pdAxres[1]) : (-3.81807)
VM Axial Resistances (pdAxres[2]) : (-12.8909)
VM Axial Resistances (pdAxres[3]) : (-6.7077)
VM Axial Resistances (pdAxres[4]) : (-26.3007)
VM Axial Resistances (pdAxres[5]) : (-33.5787)
VM Axial Resistances (pdAxres[6]) : (-11.389)
VM Axial Resistances (pdAxres[7]) : (-19.4038)
VM Axial Resistances (pdAxres[8]) : (-15.9664)
VM Axial Resistances (pdAxres[9]) : (-7.81198)
VM Axial Resistances (pdAxres[10]) : (-22.2946)
VM Axial Resistances (pdAxres[11]) : (-36.4034)
VM Axial Resistances (pdAxres[12]) : (-3.27659)
VM Axial Resistances (pdAxres[13]) : (-10.6985)
VM Axial Resistances (pdAxres[14]) : (-1.56946)
VM Axial Resistances (pdAxres[15]) : (-0.90757)
VM Axial Resistances (pdAxres[16]) : (-0.282813)
VM Axial Resistances (pdAxres[17]) : (-2.2483)
VM Axial Resistances (pdAxres[18]) : (-2.2483)
VM Axial Resistances (pdAxres[19]) : (-0.90757)
VM Axial Resistances (pdAxres[20]) : (-10.6985)
VM Axial Resistances (pdAxres[21]) : (-36.4034)
VM Axial Resistances (pdAxres[22]) : (-7.81198)
VM Axial Resistances (pdAxres[23]) : (-19.4038)
VM Axial Resistances (pdAxres[24]) : (-33.5787)
VM Axial Resistances (pdAxres[25]) : (-6.7077)
VM Axial Resistances (pdAxres[26]) : (-3.81807)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Axial Resistances (pdResults[4]) : (0)
VM Axial Resistances (pdResults[5]) : (0)
VM Axial Resistances (pdResults[6]) : (0)
VM Axial Resistances (pdResults[7]) : (0)
VM Axial Resistances (pdResults[8]) : (0)
VM Axial Resistances (pdResults[9]) : (0)
VM Axial Resistances (pdResults[10]) : (0)
VM Axial Resistances (pdResults[11]) : (0)
VM Axial Resistances (pdResults[12]) : (0)
VM Axial Resistances (pdResults[13]) : (0)
VM Axial Resistances (pdResults[14]) : (0)
VM Axial Resistances (pdResults[15]) : (0)
VM Axial Resistances (pdResults[16]) : (0)
VM Axial Resistances (pdResults[17]) : (0)
VM Axial Resistances (pdResults[18]) : (0)
VM Axial Resistances (pdResults[19]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.068)
VM Membrane Potentials (pdVms[2]) : (-0.068)
VM Membrane Potentials (pdVms[3]) : (-0.068)
VM Membrane Potentials (pdVms[4]) : (-0.068)
VM Membrane Potentials (pdVms[5]) : (-0.068)
VM Membrane Potentials (pdVms[6]) : (-0.068)
VM Membrane Potentials (pdVms[7]) : (-0.068)
VM Membrane Potentials (pdVms[8]) : (-0.068)
VM Membrane Potentials (pdVms[9]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: FINISH
00018 :: BACKWARD_SUBSTITUTION   18
00019 :: FINISH_ROW
00020 :: BACKWARD_SUBSTITUTION   16
00021 :: FINISH_ROW
00022 :: BACKWARD_SUBSTITUTION   14
00023 :: FINISH_ROW
00024 :: BACKWARD_SUBSTITUTION   12
00025 :: FINISH_ROW
00026 :: BACKWARD_SUBSTITUTION   10
00027 :: FINISH_ROW
00028 :: BACKWARD_SUBSTITUTION    8
00029 :: FINISH_ROW
00030 :: BACKWARD_SUBSTITUTION    6
00031 :: FINISH_ROW
00032 :: BACKWARD_SUBSTITUTION    4
00033 :: FINISH_ROW
00034 :: BACKWARD_SUBSTITUTION    2
00035 :: FINISH_ROW
00036 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -8.20896e-12 0 1.98078e+06 4.81827
00001 :: COMPARTMENT							 -5.48125e-12 0 2.96651e+06 13.426
00002 :: COMPARTMENT							 -2.85213e-12 0 5.70106e+06 47.4699
00003 :: COMPARTMENT							 -3.64139e-12 0 4.46537e+06 46.7046
00004 :: COMPARTMENT							 -6.20396e-12 0 2.62093e+06 20.2012
00005 :: COMPARTMENT							 -3.03544e-12 0 5.35677e+06 53.3701
00006 :: COMPARTMENT							 -4.95637e-12 0 3.28066e+06 33.9933
00007 :: COMPARTMENT							 -1.61832e-11 0 1.00476e+06 5.18436
00008 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 4.81797
00009 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00010 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-5.71812)
VM Axial Resistances (pdAxres[1]) : (-3.81807)
VM Axial Resistances (pdAxres[2]) : (-12.8909)
VM Axial Resistances (pdAxres[3]) : (-6.7077)
VM Axial Resistances (pdAxres[4]) : (-26.3007)
VM Axial Resistances (pdAxres[5]) : (-33.5787)
VM Axial Resistances (pdAxres[6]) : (-11.389)
VM Axial Resistances (pdAxres[7]) : (-19.4038)
VM Axial Resistances (pdAxres[8]) : (-15.9664)
VM Axial Resistances (pdAxres[9]) : (-7.81198)
VM Axial Resistances (pdAxres[10]) : (-22.2946)
VM Axial Resistances (pdAxres[11]) : (-36.4034)
VM Axial Resistances (pdAxres[12]) : (-3.27659)
VM Axial Resistances (pdAxres[13]) : (-10.6985)
VM Axial Resistances (pdAxres[14]) : (-1.56946)
VM Axial Resistances (pdAxres[15]) : (-0.90757)
VM Axial Resistances (pdAxres[16]) : (-0.282813)
VM Axial Resistances (pdAxres[17]) : (-2.2483)
VM Axial Resistances (pdAxres[18]) : (-2.2483)
VM Axial Resistances (pdAxres[19]) : (-0.90757)
VM Axial Resistances (pdAxres[20]) : (-10.6985)
VM Axial Resistances (pdAxres[21]) : (-36.4034)
VM Axial Resistances (pdAxres[22]) : (-7.81198)
VM Axial Resistances (pdAxres[23]) : (-19.4038)
VM Axial Resistances (pdAxres[24]) : (-33.5787)
VM Axial Resistances (pdAxres[25]) : (-6.7077)
VM Axial Resistances (pdAxres[26]) : (-3.81807)
VM Axial Resistances (pdResults[0]) : (2.74151)
VM Axial Resistances (pdResults[1]) : (4.81827)
VM Axial Resistances (pdResults[2]) : (2.74166)
VM Axial Resistances (pdResults[3]) : (8.8949)
VM Axial Resistances (pdResults[4]) : (2.74187)
VM Axial Resistances (pdResults[5]) : (37.7487)
VM Axial Resistances (pdResults[6]) : (2.74197)
VM Axial Resistances (pdResults[7]) : (23.3094)
VM Axial Resistances (pdResults[8]) : (2.74213)
VM Axial Resistances (pdResults[9]) : (10.7204)
VM Axial Resistances (pdResults[10]) : (2.74245)
VM Axial Resistances (pdResults[11]) : (41.7354)
VM Axial Resistances (pdResults[12]) : (2.7426)
VM Axial Resistances (pdResults[13]) : (14.5469)
VM Axial Resistances (pdResults[14]) : (2.74297)
VM Axial Resistances (pdResults[15]) : (2.77461)
VM Axial Resistances (pdResults[16]) : (2.74495)
VM Axial Resistances (pdResults[17]) : (4.3046)
VM Axial Resistances (pdResults[18]) : (2.74658)
VM Axial Resistances (pdResults[19]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (2.74151)
VM Membrane Potentials (pdVms[1]) : (2.74166)
VM Membrane Potentials (pdVms[2]) : (2.74187)
VM Membrane Potentials (pdVms[3]) : (2.74197)
VM Membrane Potentials (pdVms[4]) : (2.74213)
VM Membrane Potentials (pdVms[5]) : (2.74245)
VM Membrane Potentials (pdVms[6]) : (2.7426)
VM Membrane Potentials (pdVms[7]) : (2.74297)
VM Membrane Potentials (pdVms[8]) : (2.74495)
VM Membrane Potentials (pdVms[9]) : (2.74658)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: SET_DIAGONAL
00002 :: FORWARD_ELIMINATION    2
00003 :: SET_DIAGONAL
00004 :: FORWARD_ELIMINATION    4
00005 :: SET_DIAGONAL
00006 :: FORWARD_ELIMINATION    6
00007 :: SET_DIAGONAL
00008 :: FORWARD_ELIMINATION    8
00009 :: SET_DIAGONAL
00010 :: FORWARD_ELIMINATION   10
00011 :: SET_DIAGONAL
00012 :: FORWARD_ELIMINATION   12
00013 :: SET_DIAGONAL
00014 :: FORWARD_ELIMINATION   14
00015 :: SET_DIAGONAL
00016 :: FORWARD_ELIMINATION   16
00017 :: FINISH
00018 :: BACKWARD_SUBSTITUTION   18
00019 :: FINISH_ROW
00020 :: BACKWARD_SUBSTITUTION   16
00021 :: FINISH_ROW
00022 :: BACKWARD_SUBSTITUTION   14
00023 :: FINISH_ROW
00024 :: BACKWARD_SUBSTITUTION   12
00025 :: FINISH_ROW
00026 :: BACKWARD_SUBSTITUTION   10
00027 :: FINISH_ROW
00028 :: BACKWARD_SUBSTITUTION    8
00029 :: FINISH_ROW
00030 :: BACKWARD_SUBSTITUTION    6
00031 :: FINISH_ROW
00032 :: BACKWARD_SUBSTITUTION    4
00033 :: FINISH_ROW
00034 :: BACKWARD_SUBSTITUTION    2
00035 :: FINISH_ROW
00036 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -8.20896e-12 0 1.98078e+06 4.81827
00001 :: COMPARTMENT							 -5.48125e-12 0 2.96651e+06 13.426
00002 :: COMPARTMENT							 -2.85213e-12 0 5.70106e+06 47.4699
00003 :: COMPARTMENT							 -3.64139e-12 0 4.46537e+06 46.7046
00004 :: COMPARTMENT							 -6.20396e-12 0 2.62093e+06 20.2012
00005 :: COMPARTMENT							 -3.03544e-12 0 5.35677e+06 53.3701
00006 :: COMPARTMENT							 -4.95637e-12 0 3.28066e+06 33.9933
00007 :: COMPARTMENT							 -1.61832e-11 0 1.00476e+06 5.18436
00008 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 4.81797
00009 :: COMPARTMENT							 -2.23189e-10 1e-08 218562 1.28342
00010 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-5.71812)
VM Axial Resistances (pdAxres[1]) : (-3.81807)
VM Axial Resistances (pdAxres[2]) : (-12.8909)
VM Axial Resistances (pdAxres[3]) : (-6.7077)
VM Axial Resistances (pdAxres[4]) : (-26.3007)
VM Axial Resistances (pdAxres[5]) : (-33.5787)
VM Axial Resistances (pdAxres[6]) : (-11.389)
VM Axial Resistances (pdAxres[7]) : (-19.4038)
VM Axial Resistances (pdAxres[8]) : (-15.9664)
VM Axial Resistances (pdAxres[9]) : (-7.81198)
VM Axial Resistances (pdAxres[10]) : (-22.2946)
VM Axial Resistances (pdAxres[11]) : (-36.4034)
VM Axial Resistances (pdAxres[12]) : (-3.27659)
VM Axial Resistances (pdAxres[13]) : (-10.6985)
VM Axial Resistances (pdAxres[14]) : (-1.56946)
VM Axial Resistances (pdAxres[15]) : (-0.90757)
VM Axial Resistances (pdAxres[16]) : (-0.282813)
VM Axial Resistances (pdAxres[17]) : (-2.2483)
VM Axial Resistances (pdAxres[18]) : (-2.2483)
VM Axial Resistances (pdAxres[19]) : (-0.90757)
VM Axial Resistances (pdAxres[20]) : (-10.6985)
VM Axial Resistances (pdAxres[21]) : (-36.4034)
VM Axial Resistances (pdAxres[22]) : (-7.81198)
VM Axial Resistances (pdAxres[23]) : (-19.4038)
VM Axial Resistances (pdAxres[24]) : (-33.5787)
VM Axial Resistances (pdAxres[25]) : (-6.7077)
VM Axial Resistances (pdAxres[26]) : (-3.81807)
VM Axial Resistances (pdResults[0]) : (2.74151)
VM Axial Resistances (pdResults[1]) : (4.81827)
VM Axial Resistances (pdResults[2]) : (2.74166)
VM Axial Resistances (pdResults[3]) : (8.8949)
VM Axial Resistances (pdResults[4]) : (2.74187)
VM Axial Resistances (pdResults[5]) : (37.7487)
VM Axial Resistances (pdResults[6]) : (2.74197)
VM Axial Resistances (pdResults[7]) : (23.3094)
VM Axial Resistances (pdResults[8]) : (2.74213)
VM Axial Resistances (pdResults[9]) : (10.7204)
VM Axial Resistances (pdResults[10]) : (2.74245)
VM Axial Resistances (pdResults[11]) : (41.7354)
VM Axial Resistances (pdResults[12]) : (2.7426)
VM Axial Resistances (pdResults[13]) : (14.5469)
VM Axial Resistances (pdResults[14]) : (2.74297)
VM Axial Resistances (pdResults[15]) : (2.77461)
VM Axial Resistances (pdResults[16]) : (2.74495)
VM Axial Resistances (pdResults[17]) : (4.3046)
VM Axial Resistances (pdResults[18]) : (2.74658)
VM Axial Resistances (pdResults[19]) : (1.28342)
VM Membrane Potentials (pdVms[0]) : (2.74151)
VM Membrane Potentials (pdVms[1]) : (2.74166)
VM Membrane Potentials (pdVms[2]) : (2.74187)
VM Membrane Potentials (pdVms[3]) : (2.74197)
VM Membrane Potentials (pdVms[4]) : (2.74213)
VM Membrane Potentials (pdVms[5]) : (2.74245)
VM Membrane Potentials (pdVms[6]) : (2.7426)
VM Membrane Potentials (pdVms[7]) : (2.74297)
VM Membrane Potentials (pdVms[8]) : (2.74495)
VM Membrane Potentials (pdVms[9]) : (2.74658)

11. A single compartment with a naf conductance

Startup command : tests/code/serialization-singlea-naf

(No model has been loaded for the following set of commands.)

11.1. Can we serialize a single compartment with a naf conductance ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.00784064
00004 :: CONCEPTGATE 1 1 (nil)							 0.263978
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.00784064
00004 :: CONCEPTGATE 1 1 (nil)							 0.263978
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.00784064
00004 :: CONCEPTGATE 1 1 (nil)							 0.263978
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.028)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.991802
00004 :: CONCEPTGATE 1 1 (nil)							 2.13716e-05
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.00375)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: INITIALIZECHANNEL 0.045 0.000209239
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 3 (nil)							 0.991802
00004 :: CONCEPTGATE 1 1 (nil)							 2.13716e-05
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.00375)

12. Two compartments with two pools

Startup command : tests/code/serialization-pool2

(No model has been loaded for the following set of commands.)

12.1. Can we serialize two compartments with two pools ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 188248 4e-05 1.05
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00010 :: INITIALIZECHANNEL 0.137526 1.39493e-08
00011 :: LOADVOLTAGETABLE
00012 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00013 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00014 :: UPDATECOMPARTMENTCURRENT
00015 :: REGISTERCHANNELCURRENT
00016 :: FLUXPOOL							 0
00017 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.028)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 188248 4e-05 1.05
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00010 :: INITIALIZECHANNEL 0.137526 1.39493e-08
00011 :: LOADVOLTAGETABLE
00012 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00013 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00014 :: UPDATECOMPARTMENTCURRENT
00015 :: REGISTERCHANNELCURRENT
00016 :: FLUXPOOL							 0
00017 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.028)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 188248 4e-05 1.05
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00010 :: INITIALIZECHANNEL 0.137526 1.39493e-08
00011 :: LOADVOLTAGETABLE
00012 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00013 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00014 :: UPDATECOMPARTMENTCURRENT
00015 :: REGISTERCHANNELCURRENT
00016 :: FLUXPOOL							 0
00017 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Axial Resistances (pdResults[2]) : (0)
VM Axial Resistances (pdResults[3]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
VM Membrane Potentials (pdVms[1]) : (-0.028)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0122131
00004 :: CONCEPTGATE 1 1 (nil)							 0.178296
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 8.57707e-13
00008 :: EXPONENTIALDECAY 188248 4e-05 1.05
			 (8.57707e-13) (nil) (nil) (nil)							 4.16146e-05
00009 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00010 :: INITIALIZECHANNEL 0.137526 1.39493e-08
00011 :: LOADVOLTAGETABLE
00012 :: CONCEPTGATE 0 1 (nil)							 0.0122131
00013 :: CONCEPTGATE 1 1 (nil)							 0.178296
00014 :: UPDATECOMPARTMENTCURRENT
00015 :: REGISTERCHANNELCURRENT
00016 :: FLUXPOOL							 6.53019e-12
00017 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (6.53019e-12) (nil) (nil) (nil)							 8.94925e-05
00018 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.077458)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.0774585)
VM Axial Resistances (pdResults[3]) : (1.28343)
VM Membrane Potentials (pdVms[0]) : (-0.077458)
VM Membrane Potentials (pdVms[1]) : (-0.0774585)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (2)
Compartment operations
-----
00000 :: FORWARD_ELIMINATION    0
00001 :: FINISH
00002 :: BACKWARD_SUBSTITUTION    2
00003 :: FINISH_ROW
00004 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 3.24851
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0122131
00004 :: CONCEPTGATE 1 1 (nil)							 0.178296
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 8.57707e-13
00008 :: EXPONENTIALDECAY 188248 4e-05 1.05
			 (8.57707e-13) (nil) (nil) (nil)							 4.16146e-05
00009 :: COMPARTMENT							 -2.23189e-10 0 218562 1.28342
00010 :: INITIALIZECHANNEL 0.137526 1.39493e-08
00011 :: LOADVOLTAGETABLE
00012 :: CONCEPTGATE 0 1 (nil)							 0.0122131
00013 :: CONCEPTGATE 1 1 (nil)							 0.178296
00014 :: UPDATECOMPARTMENTCURRENT
00015 :: REGISTERCHANNELCURRENT
00016 :: FLUXPOOL							 6.53019e-12
00017 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (6.53019e-12) (nil) (nil) (nil)							 8.94925e-05
00018 :: FINISH
VM Axial Resistances (pdAxres[0]) : (-0.282813)
VM Axial Resistances (pdAxres[1]) : (-2.2483)
VM Axial Resistances (pdAxres[2]) : (-2.2483)
VM Axial Resistances (pdResults[0]) : (-0.077458)
VM Axial Resistances (pdResults[1]) : (3.24851)
VM Axial Resistances (pdResults[2]) : (-0.0774585)
VM Axial Resistances (pdResults[3]) : (1.28343)
VM Membrane Potentials (pdVms[0]) : (-0.077458)
VM Membrane Potentials (pdVms[1]) : (-0.0774585)

13. Compartment with a pool with a feedback loop, reversed order

Startup command : tests/code/serialization-pool1-feedback2

(No model has been loaded for the following set of commands.)

13.1. Can we serialize a compartment with a pool with a feedback loop, reversed order ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 1.0002
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: INITIALIZECHANNEL 85 2.80748e-07
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.0635319
00012 :: CONCEPTGATE 3 2 (4e-05)							 0.00990099
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 1.0002
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: INITIALIZECHANNEL 85 2.80748e-07
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.0635319
00012 :: CONCEPTGATE 3 2 (4e-05)							 0.00990099
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 1.0002
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (0) (nil) (nil) (nil)							 4e-05
00009 :: INITIALIZECHANNEL 85 2.80748e-07
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.0635319
00012 :: CONCEPTGATE 3 2 (4e-05)							 0.00990099
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 1.0002
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 1
00004 :: CONCEPTGATE 1 1 (nil)							 1.72227e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 -4.80717e-15
00008 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (-4.80717e-15) (nil) (nil) (nil)							 3.99636e-05
00009 :: INITIALIZECHANNEL 85 2.80748e-07
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.994651
00012 :: CONCEPTGATE 3 2 (3.99636e-05)							 0.00990099
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (16.0541)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1)
Heccer (dStep) : (2e-05)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 0 1.73752e+06 1.0002
00001 :: INITIALIZECHANNEL 0.147021 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 1
00004 :: CONCEPTGATE 1 1 (nil)							 1.72227e-07
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 -4.80717e-15
00008 :: EXPONENTIALDECAY 1.51581e+06 4e-05 1.1
			 (-4.80717e-15) (nil) (nil) (nil)							 3.99636e-05
00009 :: INITIALIZECHANNEL 85 2.80748e-07
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.994651
00012 :: CONCEPTGATE 3 2 (3.99636e-05)							 0.00990099
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (16.0541)

14. Compartment with a pool with a feedback loop, reversed order

Startup command : tests/code/serialization-channel2-nernst2

(No model has been loaded for the following set of commands.)

14.1. Can we serialize two solved nernst potentials applied for two channel reversal potentials ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.147021) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00009 :: INITIALIZECHANNELEREV (0.147021) 1.57921e-08
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.00139109
00012 :: CONCEPTGATE 3 1 (nil)							 0.986897
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: REGISTERCHANNELCURRENT
00015 :: FLUXPOOL							 0
00016 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00017 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (0) (0) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.147021) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00009 :: INITIALIZECHANNELEREV (0.147021) 1.57921e-08
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.00139109
00012 :: CONCEPTGATE 3 1 (nil)							 0.986897
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: REGISTERCHANNELCURRENT
00015 :: FLUXPOOL							 0
00016 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00017 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (0) (0) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer2: before simulation
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (1e-11)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.147021) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389187
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826021
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 0
00008 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00009 :: INITIALIZECHANNELEREV (0.147021) 1.57921e-08
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.00139109
00012 :: CONCEPTGATE 3 1 (nil)							 0.986897
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: REGISTERCHANNELCURRENT
00015 :: FLUXPOOL							 0
00016 :: INTERNALNERNST 0.013363 2.4 (4e-05)							 0.147021
00017 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (0) (0) (nil) (nil)							 4e-05
00018 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
pheccer: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-05)
Heccer (dStep) : (1e-11)
Compartment (mc.iType) : (1)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.14568) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389267
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826004
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.19572e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.42216e-05)							 0.14568
00009 :: INITIALIZECHANNELEREV (0.14568) 1.57921e-08
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.00141073
00012 :: CONCEPTGATE 3 1 (nil)							 0.986897
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: REGISTERCHANNELCURRENT
00015 :: FLUXPOOL							 4.65971e-12
00016 :: INTERNALNERNST 0.013363 2.4 (4.42216e-05)							 0.14568
00017 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.19572e-12) (4.65971e-12) (nil) (nil)							 4.42216e-05
00018 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0662549)
-------
pheccer2: after 1 second
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (1e-05)
Heccer (dStep) : (1e-11)
Tables (iTabulatedGateCount) : (4)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -9.35826e-12 1e-09 0.86876 1
00001 :: INITIALIZECHANNELEREV (0.14568) 1.75467e-09
00002 :: LOADVOLTAGETABLE
00003 :: CONCEPTGATE 0 1 (nil)							 0.0389267
00004 :: CONCEPTGATE 1 1 (nil)							 0.0826004
00005 :: UPDATECOMPARTMENTCURRENT
00006 :: REGISTERCHANNELCURRENT
00007 :: FLUXPOOL							 1.19572e-12
00008 :: INTERNALNERNST 0.013363 2.4 (4.42216e-05)							 0.14568
00009 :: INITIALIZECHANNELEREV (0.14568) 1.57921e-08
00010 :: LOADVOLTAGETABLE
00011 :: CONCEPTGATE 2 1 (nil)							 0.00141073
00012 :: CONCEPTGATE 3 1 (nil)							 0.986897
00013 :: UPDATECOMPARTMENTCURRENT
00014 :: REGISTERCHANNELCURRENT
00015 :: FLUXPOOL							 4.65971e-12
00016 :: INTERNALNERNST 0.013363 2.4 (4.42216e-05)							 0.14568
00017 :: EXPONENTIALDECAY 0.757903 4e-05 1
			 (1.19572e-12) (4.65971e-12) (nil) (nil)							 4.42216e-05
00018 :: FINISH
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0662549)

15. Single compartment passive model serialization

This command definition is currently disabled (disabled is 'needs implementation, low priority, see gshell tests')

Startup command : tests/code/serialization-save-singlep

(No model has been loaded for the following set of commands.)

15.1. Can we save the state of a single compartment passive model ?

1. Expected output
singlep-saved
2. This test is currently not executed
(disabled is 'needs implementation, low priority, see gshell tests')

16. Single compartment passive model serialization

This command definition is currently disabled (disabled is 'needs implementation, low priority, see gshell tests')

Startup command : tests/code/serialization-load-singlep

(No model has been loaded for the following set of commands.)

16.1. Can we load the state of a serialized single compartment passive model ?

1. Expected output
Initiated
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068)
-------
Iteration 0
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (2e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680146)
-------
Iteration 1
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (4e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680292)
-------
Iteration 2
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (6e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680438)
-------
Iteration 3
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (8e-05)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680584)
-------
Iteration 4
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.0001)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680729)
-------
Iteration 5
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00012)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0680875)
-------
Iteration 6
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00014)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068102)
-------
Iteration 7
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00016)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0681165)
-------
Iteration 8
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.00018)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.068131)
-------
Iteration 9
Heccer (pcName) : (unnamed test)
Heccer (iStatus) : (20)
Heccer (iErrorCount) : (0)
Heccer Options (iOptions) : (0)
Heccer Options (dIntervalStart) : (-0.1)
Heccer Options (dIntervalEnd) : (0.05)
Heccer Options (dConcentrationGateStart) : (4e-05)
Heccer Options (dConcentrationGateEnd) : (0.3)
Heccer Options (iIntervalEntries) : (3000)
Heccer Options (iSmallTableSize) : (149)
Heccer (dTime) : (0.0002)
Heccer (dStep) : (2e-05)
Intermediary (iCompartments) : (1)
Compartment (mc.iType) : (1)
Compartment (iParent) : (-1)
Compartment (dCm) : (4.57537e-11)
Compartment (dEm) : (-0.08)
Compartment (dInitVm) : (-0.068)
Compartment (dInject) : (0)
Compartment (dRa) : (360502)
Compartment (dRm) : (3.58441e+08)
MinimumDegree (iEntries) : (1)
MinimumDegree (piChildren[0]) : (0)
MinimumDegree (piForward[0]) : (0)
MinimumDegree (piBackward[0]) : (0)
Tables (iTabulatedGateCount) : (0)
Compartment operations
-----
00000 :: FINISH
00001 :: FINISH
Mechanism operations
-----
00000 :: COMPARTMENT							 -2.23189e-10 0 218562 1.00061
00001 :: FINISH
VM Diagonals (pdDiagonals[0]) : (1.00061)
VM Axial Resistances (pdResults[0]) : (0)
VM Axial Resistances (pdResults[1]) : (0)
VM Membrane Potentials (pdVms[0]) : (-0.0681455)
2. This test is currently not executed
(disabled is 'needs implementation, low priority, see gshell tests')