file:/local_home/local_home/hugo/neurospaces_project/heccer/source/c/snapshots/0/heccer/intermediary.h        (Mon Jun 16 00:04:18 2008 )        HOME


   1: //
   2: // Heccer : a compartmental solver that implements efficient Crank-Nicolson
   3: // integration for neuronal models.
   4: //
   5: 
   6: //////////////////////////////////////////////////////////////////////////////
   7: //'
   8: //' Heccer : testbed C implementation
   9: //'
  10: //' Copyright (C) 2006-2008 Hugo Cornelis
  11: //'
  12: //' functional ideas .. Hugo Cornelis, hugo.cornelis@gmail.com
  13: //'
  14: //' coding ............ Hugo Cornelis, hugo.cornelis@gmail.com
  15: //'
  16: //////////////////////////////////////////////////////////////////////////////
  17: 
  18: 
  19: #ifndef HECCER_INTERMEDIARY_H
  20: #define HECCER_INTERMEDIARY_H
  21: 
  22: 
  23: #include <stdio.h>
  24: 
  25: 
  26: struct Intermediary;
  27: struct MechanismIndex;
  28: 
  29: 
  30: #include "compartment.h"
  31: #include "mechanism.h"
  32: 
  33: 
  34: #ifndef TRUE
  35: #define TRUE 1
  36: #endif
  37: #ifndef FALSE
  38: #define FALSE 0
  39: #endif
  40: 
  41: 
  42: //s heccer main structure
  43: 
  44: struct Intermediary
  45: {
  46:     //m compartment array
  47: 
  48:     int iCompartments;
  49: 
  50:     struct Compartment *pcomp;
  51: 
  52:     //m all other mathematical components
  53: 
  54:     struct MathComponentArray *pmca;
  55: 
  56:     //m compartment 2 first mechanism number
  57: 
  58:     int *piC2m;
  59: 
  60: #ifdef HECCER_SOURCE_NEUROSPACES
  61: 
  62:     //m identification of the originator, mostly a cell or cell
  63:     //m population, but perhaps just a segment vector
  64: 
  65:     //m start range
  66: 
  67:     int iSerialStart;
  68: 
  69:     //m end range
  70: 
  71:     int iSerialEnd;
  72: 
  73: #endif
  74: 
  75: };
  76: 
  77: 
  78: //f prototypes
  79: 
  80: int HeccerIntermediaryBuildIndex(struct Heccer *pheccer);
  81: 
  82: int
  83: HeccerIntermediaryDump
  84: (struct Intermediary *pinter, FILE *pfile, int iSelection);
  85: 
  86: struct MathComponent *
  87: HeccerIntermediaryLookup(struct Heccer *pheccer, int i);
  88: 
  89: 
  90: #endif
  91: 
  92: 
  93: 








































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